SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/25536
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3031 O_BomoFB12729_complete:A_BomoFB_comp10276_c0_seq2
106bp
 hypothetical_protein_[Spirosoma_panaciterrae]
3032 O_BomoFB1272_complete:A_BomoFB_comp3057_c0_seq1
379bp
 PREDICTED:_dynactin_subunit_4_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005869 C dynactin complex
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007097 P nuclear migration
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0047485 F protein N-terminus binding
3033 O_BomoFB12730_complete:A_BomoFB_comp10276_c0_seq3
257bp
 PREDICTED:_MRG/MORF4L-binding_protein_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0040008 P regulation of growth
GO:0043189 C H4/H2A histone acetyltransferase complex
3034 O_BomoFB12731_complete:A_BomoFB_comp10276_c0_seq3
108bp
 hypothetical_protein_[Streptomyces_acidiscabies]
3035 O_BomoFB12732_complete:A_BomoFB_comp10276_c0_seq4
261bp
 PREDICTED:_MRG/MORF4L-binding_protein_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0040008 P regulation of growth
GO:0043189 C H4/H2A histone acetyltransferase complex
3036 O_BomoFB12733_complete:A_BomoFB_comp10276_c0_seq4
112bp
 SAM-dependent_methyltransferase_[Streptomyces_prunicolor]
3037 O_BomoFB12734_complete:A_BomoFB_comp10276_c0_seq5
257bp
 PREDICTED:_MRG/MORF4L-binding_protein_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0040008 P regulation of growth
GO:0043189 C H4/H2A histone acetyltransferase complex
3038 O_BomoFB12735_complete:A_BomoFB_comp10276_c0_seq5
108bp
 hypothetical_protein_[Streptomyces_acidiscabies]
3039 O_BomoFB12736_complete:A_BomoFB_comp10276_c0_seq6
261bp
 PREDICTED:_MRG/MORF4L-binding_protein_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0040008 P regulation of growth
GO:0043189 C H4/H2A histone acetyltransferase complex
3040 O_BomoFB12737_complete:A_BomoFB_comp10276_c0_seq6
112bp
 SAM-dependent_methyltransferase_[Streptomyces_prunicolor]
3041 O_BomoFB12738_3prime_partial:A_BomoFB_comp10278_c0_seq1
440bp
 PREDICTED:_probable_phenylalanine--tRNA_ligase,_mitochondrial_[Papilio_machaon]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004826 F phenylalanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006432 P phenylalanyl-tRNA aminoacylation
GO:0008033 P tRNA processing
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
3042 O_BomoFB12739_5prime_partial:A_BomoFB_comp10279_c0_seq1
109bp
 hypothetical_protein_[Burkholderia_ubonensis]
3043 O_BomoFB1273_5prime_partial:A_BomoFB_comp3059_c0_seq1
676bp
 PREDICTED:_uncharacterized_protein_LOC101745573_isoform_X2_[Bombyx_mori]
3044 O_BomoFB12740_complete:A_BomoFB_comp10280_c0_seq1
429bp
 PREDICTED:_inositol_polyphosphate_multikinase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000823 F inositol-1,4,5-trisphosphate 6-kinase activity
GO:0000824 F inositol tetrakisphosphate 3-kinase activity
GO:0001841 P neural tube formation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032958 P inositol phosphate biosynthetic process
3045 O_BomoFB12741_complete:A_BomoFB_comp10280_c0_seq2
138bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
3046 O_BomoFB12742_complete:A_BomoFB_comp10280_c0_seq2
128bp
 glutathione_s-transferase_protein_[Ralstonia_solanacearum_Po82]
3047 O_BomoFB12743_complete:A_BomoFB_comp10280_c0_seq3
429bp
 PREDICTED:_inositol_polyphosphate_multikinase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000823 F inositol-1,4,5-trisphosphate 6-kinase activity
GO:0000824 F inositol tetrakisphosphate 3-kinase activity
GO:0001841 P neural tube formation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032958 P inositol phosphate biosynthetic process
3048 O_BomoFB12744_complete:A_BomoFB_comp10280_c0_seq3
132bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
3049 O_BomoFB12745_complete:A_BomoFB_comp10280_c0_seq4
429bp
 PREDICTED:_inositol_polyphosphate_multikinase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000823 F inositol-1,4,5-trisphosphate 6-kinase activity
GO:0000824 F inositol tetrakisphosphate 3-kinase activity
GO:0001841 P neural tube formation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032958 P inositol phosphate biosynthetic process
3050 O_BomoFB12746_complete:A_BomoFB_comp10280_c0_seq5
429bp
 PREDICTED:_inositol_polyphosphate_multikinase_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000823 F inositol-1,4,5-trisphosphate 6-kinase activity
GO:0000824 F inositol tetrakisphosphate 3-kinase activity
GO:0001841 P neural tube formation
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0032958 P inositol phosphate biosynthetic process
3051 O_BomoFB12747_complete:A_BomoFB_comp10280_c0_seq7
307bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
3052 O_BomoFB12748_complete:A_BomoFB_comp10280_c0_seq7
116bp
 glutathione_s-transferase_protein_[Ralstonia_solanacearum_Po82]
3053 O_BomoFB12749_complete:A_BomoFB_comp10280_c0_seq9
138bp
 3-hydroxyacyl-CoA_dehydrogenase_[Bombyx_mori]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070403 F NAD+ binding
3054 O_BomoFB1274_complete:A_BomoFB_comp3060_c1_seq1
525bp
 PREDICTED:_uncharacterized_protein_LOC106137277_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0003700 F DNA-binding transcription factor activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0038202 P TORC1 signaling
GO:0042594 P response to starvation
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0044246 P regulation of metabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046982 F protein heterodimerization activity
3055 O_BomoFB12750_complete:A_BomoFB_comp10280_c0_seq9
120bp
 glutathione_s-transferase_protein_[Ralstonia_solanacearum_Po82]
3056 O_BomoFB12751_3prime_partial:A_BomoFB_comp10281_c0_seq1
269bp
 PREDICTED:_ATP-binding_cassette_sub-family_G_member_1-like_isoform_X1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005543 F phospholipid binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009720 P detection of hormone stimulus
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010887 P negative regulation of cholesterol storage
GO:0010888 P negative regulation of lipid storage
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042157 P lipoprotein metabolic process
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0055037 C recycling endosome
GO:0055085 P transmembrane transport
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
3057 O_BomoFB12752_3prime_partial:A_BomoFB_comp10281_c0_seq2
257bp
 ATP-binding_cassette_sub-family_G_member_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010888 P negative regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0055037 C recycling endosome
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
3058 O_BomoFB12753_5prime_partial:A_BomoFB_comp10281_c1_seq1
440bp
 PREDICTED:_ATP-binding_cassette_sub-family_G_member_1-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0033344 P cholesterol efflux
GO:0034041 F ABC-type sterol transporter activity
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:0055085 P transmembrane transport
3059 O_BomoFB12754_complete:A_BomoFB_comp10281_c1_seq1
103bp
3060 O_BomoFB12755_complete:A_BomoFB_comp10281_c1_seq3
173bp
 PREDICTED:_BTB/POZ_domain-containing_protein_KCTD1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0051260 P protein homooligomerization
previous next from show/25536

- SilkBase 1999-2023 -