SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/25536
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2581 O_BomoFB12323_complete:A_BomoFB_comp10193_c0_seq2
802bp
 PREDICTED:_U3_small_nucleolar_RNA-associated_protein_14_homolog_A_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030490 P maturation of SSU-rRNA
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
2582 O_BomoFB12324_complete:A_BomoFB_comp10193_c0_seq2
246bp
2583 O_BomoFB12325_3prime_partial:A_BomoFB_comp10193_c0_seq2
242bp
 HM00018_[Heliconius_melpomene]
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0019898 C extrinsic component of membrane
GO:0030904 C retromer complex
GO:0031901 C early endosome membrane
GO:0034498 P early endosome to Golgi transport
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0043231 C intracellular membrane-bounded organelle
2584 O_BomoFB12326_5prime_partial:A_BomoFB_comp10193_c0_seq2
134bp
 PREDICTED:_N-acylneuraminate_cytidylyltransferase_[Amyelois_transitella]
GO:0005623 C obsolete cell
GO:0005634 C nucleus
GO:0006054 P N-acetylneuraminate metabolic process
GO:0008781 F N-acylneuraminate cytidylyltransferase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0090632 F N-glycolylneuraminic acid (Neu5Gc) cytidylyltransferase activity
GO:0090633 F keto-deoxynonulosonic acid (KDN) cytidylyltransferase activity
2585 O_BomoFB12327_complete:A_BomoFB_comp10193_c0_seq2
118bp
 PREDICTED:_bcl-2-related_protein_A1_[Sarcophilus_harrisii]
2586 O_BomoFB12328_complete:A_BomoFB_comp10194_c0_seq1
534bp
 hypothetical_protein_KGM_07091_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2587 O_BomoFB12329_complete:A_BomoFB_comp10194_c0_seq1
120bp
 hypothetical_protein_[Clostridium_cadaveris]
2588 O_BomoFB1232_complete:A_BomoFB_comp3006_c0_seq1
128bp
 PREDICTED:_chromatin_complexes_subunit_BAP18-like_isoform_X2_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0071339 C MLL1 complex
2589 O_BomoFB12330_complete:A_BomoFB_comp10194_c0_seq1
109bp
 hypothetical_protein_KAFR_0K01460_[Kazachstania_africana_CBS_2517]
2590 O_BomoFB12331_complete:A_BomoFB_comp10194_c0_seq2
534bp
 hypothetical_protein_KGM_07091_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2591 O_BomoFB12332_complete:A_BomoFB_comp10194_c0_seq2
120bp
 hypothetical_protein_[Clostridium_cadaveris]
2592 O_BomoFB12333_complete:A_BomoFB_comp10194_c0_seq2
109bp
 hypothetical_protein_KAFR_0K01460_[Kazachstania_africana_CBS_2517]
2593 O_BomoFB12334_complete:A_BomoFB_comp10195_c0_seq1
350bp
 PREDICTED:_uncharacterized_protein_LOC101745102_isoform_X6_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0017137 F small GTPase binding
GO:0031410 C cytoplasmic vesicle
GO:0070062 C extracellular exosome
2594 O_BomoFB12335_complete:A_BomoFB_comp10195_c0_seq1
109bp
 ribonuclease_BN_[Aureimonas_ureilytica]
2595 O_BomoFB12336_complete:A_BomoFB_comp10195_c0_seq2
1305bp
 PREDICTED:_uncharacterized_protein_LOC101745102_isoform_X5_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0017137 F small GTPase binding
GO:0031410 C cytoplasmic vesicle
GO:0070062 C extracellular exosome
2596 O_BomoFB12337_complete:A_BomoFB_comp10195_c0_seq2
109bp
 ribonuclease_BN_[Aureimonas_ureilytica]
2597 O_BomoFB12338_complete:A_BomoFB_comp10195_c0_seq3
1438bp
 PREDICTED:_uncharacterized_protein_LOC101745102_isoform_X5_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0017137 F small GTPase binding
GO:0031410 C cytoplasmic vesicle
GO:0070062 C extracellular exosome
2598 O_BomoFB12339_complete:A_BomoFB_comp10195_c0_seq3
109bp
 ribonuclease_BN_[Aureimonas_ureilytica]
2599 O_BomoFB1233_complete:A_BomoFB_comp3006_c0_seq2
135bp
 PREDICTED:_chromatin_complexes_subunit_BAP18-like_isoform_X2_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016568 P chromatin organization
GO:0016589 C NURF complex
GO:0071339 C MLL1 complex
2600 O_BomoFB12340_complete:A_BomoFB_comp10196_c0_seq1
133bp
 PREDICTED:_restin_homolog_isoform_X3_[Bombyx_mori]
2601 O_BomoFB12341_complete:A_BomoFB_comp10196_c0_seq1
128bp
 prohead_protease_[Asticcacaulis_sp._AC466]
2602 O_BomoFB12342_complete:A_BomoFB_comp10196_c0_seq2
1820bp
 PREDICTED:_restin_homolog_isoform_X1_[Bombyx_mori]
GO:0000776 C kinetochore
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005876 C spindle microtubule
GO:0007017 P microtubule-based process
GO:0007349 P cellularization
GO:0008017 F microtubule binding
GO:0030424 C axon
GO:0035371 C microtubule plus-end
GO:0044295 C axonal growth cone
GO:0045169 C fusome
GO:0051010 F microtubule plus-end binding
GO:0070854 F myosin VI heavy chain binding
2603 O_BomoFB12343_complete:A_BomoFB_comp10196_c0_seq2
168bp
 sigma-54-dependent_Fis_family_transcriptional_regulator_[Chitinophagaceae_bacterium_PMP191F]
2604 O_BomoFB12344_complete:A_BomoFB_comp10196_c0_seq2
109bp
 helix-turn-helix_transcriptional_regulator_[Adlercreutzia_equolifaciens]
2605 O_BomoFB12345_complete:A_BomoFB_comp10196_c0_seq3
357bp
 PREDICTED:_restin_homolog_isoform_X7_[Bombyx_mori]
GO:0000776 C kinetochore
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005876 C spindle microtubule
GO:0007017 P microtubule-based process
GO:0007349 P cellularization
GO:0008017 F microtubule binding
GO:0030424 C axon
GO:0035371 C microtubule plus-end
GO:0044295 C axonal growth cone
GO:0045169 C fusome
GO:0051010 F microtubule plus-end binding
GO:0070854 F myosin VI heavy chain binding
2606 O_BomoFB12346_complete:A_BomoFB_comp10196_c0_seq3
109bp
 helix-turn-helix_transcriptional_regulator_[Adlercreutzia_equolifaciens]
2607 O_BomoFB12347_complete:A_BomoFB_comp10196_c0_seq4
1701bp
 PREDICTED:_restin_homolog_isoform_X9_[Bombyx_mori]
GO:0000776 C kinetochore
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005876 C spindle microtubule
GO:0007017 P microtubule-based process
GO:0007349 P cellularization
GO:0008017 F microtubule binding
GO:0030424 C axon
GO:0035371 C microtubule plus-end
GO:0044295 C axonal growth cone
GO:0045169 C fusome
GO:0051010 F microtubule plus-end binding
GO:0070854 F myosin VI heavy chain binding
2608 O_BomoFB12348_complete:A_BomoFB_comp10196_c0_seq4
109bp
 helix-turn-helix_transcriptional_regulator_[Adlercreutzia_equolifaciens]
2609 O_BomoFB12349_complete:A_BomoFB_comp10196_c0_seq5
1691bp
 PREDICTED:_restin_homolog_isoform_X5_[Bombyx_mori]
GO:0000776 C kinetochore
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005876 C spindle microtubule
GO:0007017 P microtubule-based process
GO:0007349 P cellularization
GO:0008017 F microtubule binding
GO:0030424 C axon
GO:0035371 C microtubule plus-end
GO:0044295 C axonal growth cone
GO:0045169 C fusome
GO:0051010 F microtubule plus-end binding
GO:0070854 F myosin VI heavy chain binding
2610 O_BomoFB1234_complete:A_BomoFB_comp3008_c0_seq1
267bp
 PREDICTED:_peptidyl-prolyl_cis-trans_isomerase_D_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005528 F FK506 binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0006461 P protein-containing complex assembly
GO:0006810 P transport
GO:0006915 P apoptotic process
GO:0008134 F transcription factor binding
GO:0015031 P protein transport
GO:0016853 F isomerase activity
GO:0030331 F estrogen receptor binding
GO:0030544 F Hsp70 protein binding
GO:0031072 F heat shock protein binding
GO:0034389 P lipid droplet organization
GO:0042277 F peptide binding
GO:0042981 P regulation of apoptotic process
GO:0043065 P positive regulation of apoptotic process
GO:0045070 P positive regulation of viral genome replication
GO:0050714 P positive regulation of protein secretion
GO:0051879 F Hsp90 protein binding
GO:0061077 P chaperone-mediated protein folding
GO:0071492 P cellular response to UV-A
previous next from show/25536

- SilkBase 1999-2023 -