SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/25536
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1681 O_BomoFB11513_3prime_partial:A_BomoFB_comp10043_c1_seq2
680bp
 PREDICTED:_cullin-4A_[Papilio_xuthus]
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0031175 P neuron projection development
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035518 P histone H2A monoubiquitination
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070914 P UV-damage excision repair
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
1682 O_BomoFB11514_complete:A_BomoFB_comp10044_c0_seq1
463bp
 cyclin_dependent_kinase_8_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051726 P regulation of cell cycle
1683 O_BomoFB11515_3prime_partial:A_BomoFB_comp10044_c0_seq2
280bp
 PREDICTED:_DNA_ligase_4-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033152 P immunoglobulin V(D)J recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070419 C nonhomologous end joining complex
GO:0071897 P DNA biosynthetic process
1684 O_BomoFB11516_3prime_partial:A_BomoFB_comp10044_c0_seq4
517bp
 PREDICTED:_DNA_ligase_4-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033152 P immunoglobulin V(D)J recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070419 C nonhomologous end joining complex
GO:0071897 P DNA biosynthetic process
1685 O_BomoFB11517_internal:A_BomoFB_comp10044_c1_seq1
229bp
 PREDICTED:_DNA_ligase_4-like_[Bombyx_mori]
GO:0000127 C transcription factor TFIIIC complex
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0031965 C nuclear membrane
GO:0042791 P 5S class rRNA transcription by RNA polymerase III
GO:0042797 P tRNA transcription by RNA polymerase III
1686 O_BomoFB11518_complete:A_BomoFB_comp10045_c0_seq1
456bp
 hypothetical_protein_KGM_09287_[Danaus_plexippus]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990247 F N6-methyladenosine-containing RNA binding
1687 O_BomoFB11519_complete:A_BomoFB_comp10045_c0_seq1
154bp
1688 O_BomoFB1151_3prime_partial:A_BomoFB_comp2934_c0_seq1
298bp
 PREDICTED:_protein_MAK16_homolog_A_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
1689 O_BomoFB11520_complete:A_BomoFB_comp10045_c0_seq1
113bp
 membrane_protein_[Mycobacterium_obuense]
1690 O_BomoFB11521_complete:A_BomoFB_comp10045_c0_seq1
110bp
 hypothetical_protein_[Saccharomonospora_halophila]
1691 O_BomoFB11522_complete:A_BomoFB_comp10045_c0_seq2
652bp
 hypothetical_protein_KGM_09287_[Danaus_plexippus]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006959 P humoral immune response
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990247 F N6-methyladenosine-containing RNA binding
1692 O_BomoFB11523_complete:A_BomoFB_comp10045_c0_seq2
154bp
1693 O_BomoFB11524_complete:A_BomoFB_comp10045_c0_seq2
113bp
 membrane_protein_[Mycobacterium_obuense]
1694 O_BomoFB11525_complete:A_BomoFB_comp10045_c0_seq2
110bp
 hypothetical_protein_[Saccharomonospora_halophila]
1695 O_BomoFB11526_complete:A_BomoFB_comp10045_c0_seq3
609bp
 hypothetical_protein_KGM_09287_[Danaus_plexippus]
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006959 P humoral immune response
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1990247 F N6-methyladenosine-containing RNA binding
1696 O_BomoFB11527_complete:A_BomoFB_comp10045_c0_seq3
154bp
1697 O_BomoFB11528_complete:A_BomoFB_comp10045_c0_seq3
113bp
 membrane_protein_[Mycobacterium_obuense]
1698 O_BomoFB11529_complete:A_BomoFB_comp10045_c0_seq3
110bp
 hypothetical_protein_[Saccharomonospora_halophila]
1699 O_BomoFB1152_5prime_partial:A_BomoFB_comp2934_c0_seq1
122bp
1700 O_BomoFB11530_complete:A_BomoFB_comp10046_c0_seq1
274bp
 PREDICTED:_claspin_homolog,_partial_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0043874 F acireductone synthase activity
GO:0046872 F metal ion binding
1701 O_BomoFB11531_complete:A_BomoFB_comp10046_c0_seq2
808bp
 PREDICTED:_claspin_homolog,_partial_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0043874 F acireductone synthase activity
GO:0046872 F metal ion binding
1702 O_BomoFB11532_complete:A_BomoFB_comp10046_c0_seq2
319bp
1703 O_BomoFB11533_complete:A_BomoFB_comp10046_c0_seq2
103bp
 cyclic_nucleotide-binding_protein,_partial_[uncultured_bacterium]
1704 O_BomoFB11534_complete:A_BomoFB_comp10047_c0_seq1
112bp
 putative_selenoprotein_M_[Danaus_plexippus]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0048471 C perinuclear region of cytoplasm
1705 O_BomoFB11535_complete:A_BomoFB_comp10047_c0_seq2
112bp
 putative_selenoprotein_M_[Danaus_plexippus]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0048471 C perinuclear region of cytoplasm
1706 O_BomoFB11536_5prime_partial:A_BomoFB_comp10048_c0_seq1
267bp
 casein_kinase_2_beta_subunit_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0031519 C PcG protein complex
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
1707 O_BomoFB11537_complete:A_BomoFB_comp10048_c0_seq2
221bp
 casein_kinase_2_beta_subunit_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0031519 C PcG protein complex
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
1708 O_BomoFB11538_complete:A_BomoFB_comp10048_c0_seq3
223bp
 PREDICTED:_casein_kinase_2_beta_subunit_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005956 C protein kinase CK2 complex
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0031519 C PcG protein complex
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
1709 O_BomoFB11539_5prime_partial:A_BomoFB_comp10048_c0_seq4
269bp
 PREDICTED:_casein_kinase_2_beta_subunit_isoform_X2_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0005102 F signaling receptor binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005956 C protein kinase CK2 complex
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0008134 F transcription factor binding
GO:0010862 P positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0016055 P Wnt signaling pathway
GO:0019887 F protein kinase regulator activity
GO:0019904 F protein domain specific binding
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0031519 C PcG protein complex
GO:0032927 P positive regulation of activin receptor signaling pathway
GO:0033211 P adiponectin-activated signaling pathway
GO:0042802 F identical protein binding
GO:0043537 P negative regulation of blood vessel endothelial cell migration
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
GO:0061154 P endothelial tube morphogenesis
GO:0070062 C extracellular exosome
1710 O_BomoFB1153_complete:A_BomoFB_comp2935_c0_seq1
343bp
 spliceosomal_protein_on_the_X_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
previous next from show/25536

- SilkBase 1999-2023 -