Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1651	O_BomoFB11487_complete:A_BomoFB_comp10032_c0_seq9 160bp	Bomo_Chr13	PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X3_[Bombyx_mori]
1652	O_BomoFB11488_5prime_partial:A_BomoFB_comp10034_c0_seq1 158bp	Bomo_Chr11	PREDICTED:_ubiquitin-conjugating_enzyme_E2_W_[Amyelois_transitella]	GO:0000166 F nucleotide binding GO:0000209 P protein polyubiquitination GO:0004842 F ubiquitin-protein transferase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006513 P protein monoubiquitination GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins GO:0006974 P cellular response to DNA damage stimulus GO:0016567 P protein ubiquitination GO:0016740 F transferase activity GO:0031625 F ubiquitin protein ligase binding GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process GO:0061630 F ubiquitin protein ligase activity GO:0071218 P cellular response to misfolded protein
1653	O_BomoFB11489_complete:A_BomoFB_comp10035_c0_seq1 125bp	Bomo_Chr3	endonuclease-reverse_transcriptase_[Bombyx_mori]
1654	O_BomoFB1148_complete:A_BomoFB_comp2932_c0_seq1 133bp	Bomo_Chr24	hCG2002091,_isoform_CRA_d_[Homo_sapiens]
1655	O_BomoFB11490_complete:A_BomoFB_comp10035_c0_seq1 123bp	Bomo_Chr3
1656	O_BomoFB11491_complete:A_BomoFB_comp10035_c0_seq2 175bp	Bomo_Scaf107	endonuclease-reverse_transcriptase_[Bombyx_mori]
1657	O_BomoFB11492_complete:A_BomoFB_comp10035_c0_seq2 132bp	Bomo_Scaf107	recombinase_[Leucobacter_sp._Ag1]
1658	O_BomoFB11493_complete:A_BomoFB_comp10035_c0_seq2 128bp	Bomo_Scaf107	hypothetical_protein_HMPREF1541_00386_[Cyphellophora_europaea_CBS_101466]
1659	O_BomoFB11494_complete:A_BomoFB_comp10035_c0_seq3 119bp	Bomo_Scaf107	endonuclease-reverse_transcriptase_[Bombyx_mori]
1660	O_BomoFB11495_complete:A_BomoFB_comp10035_c0_seq3 104bp	Bomo_Scaf107	hypothetical_protein_[Lactobacillus_mali]
1661	O_BomoFB11496_complete:A_BomoFB_comp10037_c1_seq1 404bp	Bomo_Chr18	PREDICTED:_proto-oncogene_c-Fos_isoform_X2_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0042025 C host cell nucleus GO:0043565 F sequence-specific DNA binding
1662	O_BomoFB11497_complete:A_BomoFB_comp10037_c1_seq2 426bp	Bomo_Chr18	PREDICTED:_proto-oncogene_c-Fos_isoform_X2_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0042025 C host cell nucleus GO:0043565 F sequence-specific DNA binding
1663	O_BomoFB11498_complete:A_BomoFB_comp10038_c2_seq1 1135bp	Bomo_Chr1	PREDICTED:_uncharacterized_protein_LOC101739482_isoform_X3_[Bombyx_mori]	GO:0004112 F cyclic-nucleotide phosphodiesterase activity GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity GO:0004115 F 3',5'-cyclic-AMP phosphodiesterase activity GO:0005622 C intracellular anatomical structure GO:0006198 P cAMP catabolic process GO:0007165 P signal transduction GO:0008081 F phosphoric diester hydrolase activity GO:0016787 F hydrolase activity GO:0019933 P cAMP-mediated signaling GO:0046872 F metal ion binding
1664	O_BomoFB11499_complete:A_BomoFB_comp10038_c2_seq1 155bp	Bomo_Chr1	transmembrane_protein,_putative_[Rhizoctonia_solani_AG-3_Rhs1AP]
1665	O_BomoFB1149_3prime_partial:A_BomoFB_comp2933_c0_seq1 320bp	Bomo_Chr23	Ribosomal_RNA_processing_protein_1-like_[Papilio_xuthus]	GO:0000022 P mitotic spindle elongation GO:0005634 C nucleus GO:0006364 P rRNA processing GO:0016072 P rRNA metabolic process GO:0030687 C preribosome, large subunit precursor GO:0030688 C preribosome, small subunit precursor
1666	O_BomoFB114_internal:A_BomoFB_comp304_c0_seq1 140bp	Bomo_Chr11	PREDICTED:_nuclear_pore_complex_protein_Nup98-Nup96_isoform_X1_[Bombyx_mori]	GO:0000059 P obsolete protein import into nucleus, docking GO:0000776 C kinetochore GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery GO:0003723 F RNA binding GO:0005215 F transporter activity GO:0005487 F structural constituent of nuclear pore GO:0005515 F protein binding GO:0005634 C nucleus GO:0005635 C nuclear envelope GO:0005643 C nuclear pore GO:0005654 C nucleoplasm GO:0005829 C cytosol GO:0006260 P DNA replication GO:0006405 P RNA export from nucleus GO:0006406 P mRNA export from nucleus GO:0006409 P tRNA export from nucleus GO:0006810 P transport GO:0006913 P nucleocytoplasmic transport GO:0006999 P nuclear pore organization GO:0007062 P sister chromatid cohesion GO:0007077 P mitotic nuclear membrane disassembly GO:0008139 F nuclear localization sequence binding GO:0010827 P regulation of glucose transmembrane transport GO:0015031 P protein transport GO:0016020 C membrane GO:0016032 P viral process GO:0016925 P protein sumoylation GO:0017056 F structural constituent of nuclear pore GO:0019083 P viral transcription GO:0031047 P gene silencing by RNA GO:0031080 C nuclear pore outer ring GO:0031965 C nuclear membrane GO:0034398 P telomere tethering at nuclear periphery GO:0034399 C nuclear periphery GO:0042277 F peptide binding GO:0042405 C nuclear inclusion body GO:0044614 C nuclear pore cytoplasmic filaments GO:0044615 C nuclear pore nuclear basket GO:0051028 P mRNA transport GO:0051292 P nuclear pore complex assembly GO:0075733 P intracellular transport of virus GO:1900034 P regulation of cellular response to heat
1667	O_BomoFB11500_complete:A_BomoFB_comp10038_c2_seq1 123bp	Bomo_Chr1	unnamed_protein_product_[Phytomonas_sp._isolate_EM1]
1668	O_BomoFB11501_complete:A_BomoFB_comp10038_c2_seq2 1143bp	Bomo_Chr1	PREDICTED:_uncharacterized_protein_LOC101739482_isoform_X3_[Bombyx_mori]	GO:0004112 F cyclic-nucleotide phosphodiesterase activity GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity GO:0004115 F 3',5'-cyclic-AMP phosphodiesterase activity GO:0005622 C intracellular anatomical structure GO:0006198 P cAMP catabolic process GO:0007165 P signal transduction GO:0008081 F phosphoric diester hydrolase activity GO:0016787 F hydrolase activity GO:0019933 P cAMP-mediated signaling GO:0046872 F metal ion binding
1669	O_BomoFB11502_complete:A_BomoFB_comp10038_c2_seq2 155bp	Bomo_Chr1	transmembrane_protein,_putative_[Rhizoctonia_solani_AG-3_Rhs1AP]
1670	O_BomoFB11503_complete:A_BomoFB_comp10038_c2_seq2 131bp	Bomo_Chr1	secretion_protein_EspV_[Escherichia_coli]
1671	O_BomoFB11504_internal:A_BomoFB_comp10039_c0_seq1 205bp	Bomo_Chr17	hypothetical_protein_FF38_12759_[Lucilia_cuprina]
1672	O_BomoFB11505_3prime_partial:A_BomoFB_comp10039_c0_seq1 153bp	Bomo_Chr17	beta-actin_[Operophtera_brumata]	GO:0000166 F nucleotide binding GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0005856 C cytoskeleton
1673	O_BomoFB11506_5prime_partial:A_BomoFB_comp10039_c0_seq2 160bp	Bomo_Chr17	hypothetical_protein_FF38_12759_[Lucilia_cuprina]
1674	O_BomoFB11507_3prime_partial:A_BomoFB_comp10039_c0_seq2 153bp	Bomo_Chr17	beta-actin_[Operophtera_brumata]	GO:0000166 F nucleotide binding GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0005856 C cytoskeleton
1675	O_BomoFB11508_complete:A_BomoFB_comp10040_c0_seq1 236bp	Bomo_Chr3	PREDICTED:_pre-mRNA-splicing_factor_Syf2_[Plutella_xylostella]	GO:0000398 P mRNA splicing, via spliceosome GO:0005634 C nucleus GO:0006397 P mRNA processing GO:0008380 P RNA splicing GO:0071004 C U2-type prespliceosome GO:0071006 C U2-type catalytic step 1 spliceosome GO:0071007 C U2-type catalytic step 2 spliceosome GO:0071008 C U2-type post-mRNA release spliceosomal complex
1676	O_BomoFB11509_complete:A_BomoFB_comp10041_c0_seq2 378bp	Bomo_Chr18	PREDICTED:_serine/arginine-rich_splicing_factor_4-like_[Amyelois_transitella]
1677	O_BomoFB1150_5prime_partial:A_BomoFB_comp2933_c0_seq1 118bp	Bomo_Chr23	hypothetical_protein_[Dyadobacter_beijingensis]
1678	O_BomoFB11510_complete:A_BomoFB_comp10042_c0_seq2 112bp	Bomo_Scaf003	inner_membrane_protein_yhbX_[Escherichia_coli_PCN033]
1679	O_BomoFB11511_5prime_partial:A_BomoFB_comp10043_c0_seq1 122bp	Bomo_Chr5	PREDICTED:_cullin-4A_[Papilio_polytes]	GO:0001701 P in utero embryonic development GO:0005515 F protein binding GO:0006281 P DNA repair GO:0006511 P ubiquitin-dependent protein catabolic process GO:0006974 P cellular response to DNA damage stimulus GO:0008284 P positive regulation of cell population proliferation GO:0016032 P viral process GO:0016567 P protein ubiquitination GO:0030097 P hemopoiesis GO:0030853 P negative regulation of granulocyte differentiation GO:0031461 C cullin-RING ubiquitin ligase complex GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex GO:0031625 F ubiquitin protein ligase binding GO:0035019 P somatic stem cell population maintenance GO:0042787 P ubiquitin-dependent protein catabolic process GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process GO:0045732 P positive regulation of protein catabolic process GO:0051246 P regulation of protein metabolic process GO:0061630 F ubiquitin protein ligase activity GO:0080008 C Cul4-RING E3 ubiquitin ligase complex GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle GO:2000001 P regulation of DNA damage checkpoint GO:2000819 P regulation of nucleotide-excision repair
1680	O_BomoFB11512_internal:A_BomoFB_comp10043_c1_seq1 152bp	Bomo_Chr5	PREDICTED:_cullin-4A_[Papilio_xuthus]	GO:0000715 P nucleotide-excision repair, DNA damage recognition GO:0000717 P nucleotide-excision repair, DNA duplex unwinding GO:0003684 F damaged DNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0006281 P DNA repair GO:0006283 P transcription-coupled nucleotide-excision repair GO:0006293 P nucleotide-excision repair, preincision complex stabilization GO:0006294 P nucleotide-excision repair, preincision complex assembly GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion GO:0006511 P ubiquitin-dependent protein catabolic process GO:0006974 P cellular response to DNA damage stimulus GO:0007049 P cell cycle GO:0016567 P protein ubiquitination GO:0031175 P neuron projection development GO:0031461 C cullin-RING ubiquitin ligase complex GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex GO:0031625 F ubiquitin protein ligase binding GO:0033683 P nucleotide-excision repair, DNA incision GO:0035518 P histone H2A monoubiquitination GO:0042769 P obsolete DNA damage response, detection of DNA damage GO:0042787 P ubiquitin-dependent protein catabolic process GO:0045732 P positive regulation of protein catabolic process GO:0061630 F ubiquitin protein ligase activity GO:0070062 C extracellular exosome GO:0070911 P global genome nucleotide-excision repair GO:0070914 P UV-damage excision repair GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle