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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

next from show/25536
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1 O_BomoFB10000_3prime_partial:A_BomoFB_comp9672_c0_seq1
180bp
2 O_BomoFB10001_internal:A_BomoFB_comp9672_c0_seq2
193bp
3 O_BomoFB10002_internal:A_BomoFB_comp9672_c0_seq2
193bp
4 O_BomoFB10003_5prime_partial:A_BomoFB_comp9672_c0_seq2
169bp
 PREDICTED:_hnRNPA/B-like_28_isoform_X1_[Bombyx_mori]
5 O_BomoFB10004_5prime_partial:A_BomoFB_comp9672_c0_seq3
194bp
6 O_BomoFB10005_5prime_partial:A_BomoFB_comp9672_c0_seq3
137bp
 PREDICTED:_hnRNPA/B-like_28_isoform_X3_[Bombyx_mori]
7 O_BomoFB10006_5prime_partial:A_BomoFB_comp9672_c0_seq3
119bp
 transcriptional_regulator_[Sinorhizobium_fredii]
8 O_BomoFB10007_5prime_partial:A_BomoFB_comp9672_c0_seq5
194bp
9 O_BomoFB10008_5prime_partial:A_BomoFB_comp9672_c0_seq5
137bp
 PREDICTED:_hnRNPA/B-like_28_isoform_X3_[Bombyx_mori]
10 O_BomoFB10009_complete:A_BomoFB_comp9672_c0_seq5
106bp
 LysR_family_transcriptional_regulator_[Bradyrhizobium_sp._Cp5.3]
11 O_BomoFB1000_5prime_partial:A_BomoFB_comp2801_c0_seq1
247bp
 PREDICTED:_UPF0454_protein_C12orf49_homolog_[Papilio_machaon]
GO:0005576 C extracellular region
12 O_BomoFB10010_complete:A_BomoFB_comp9673_c0_seq1
791bp
 PREDICTED:_nuclear-pore_anchor-like_isoform_X2_[Bombyx_mori]
13 O_BomoFB10011_complete:A_BomoFB_comp9673_c0_seq1
353bp
 PREDICTED:_nuclear-pore_anchor-like_isoform_X2_[Bombyx_mori]
14 O_BomoFB10012_complete:A_BomoFB_comp9673_c0_seq1
183bp
 PREDICTED:_nuclear-pore_anchor-like_isoform_X2_[Bombyx_mori]
15 O_BomoFB10013_complete:A_BomoFB_comp9674_c0_seq1
732bp
 PREDICTED:_NADH-ubiquinone_oxidoreductase_75_kDa_subunit,_mitochondrial_[Amyelois_transitella]
GO:0003954 F NADH dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0019233 P sensory perception of pain
GO:0042773 P ATP synthesis coupled electron transport
GO:0045333 P cellular respiration
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051537 F 2 iron, 2 sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
GO:0072593 P reactive oxygen species metabolic process
16 O_BomoFB10014_complete:A_BomoFB_comp9674_c0_seq1
188bp
17 O_BomoFB10015_3prime_partial:A_BomoFB_comp9675_c0_seq1
202bp
 PREDICTED:_PI-PLC_X_domain-containing_protein_3_[Papilio_xuthus]
GO:0006629 P lipid metabolic process
GO:0008081 F phosphoric diester hydrolase activity
18 O_BomoFB10016_complete:A_BomoFB_comp9676_c0_seq1
303bp
 PREDICTED:_probable_polyamine_oxidase_5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006598 P polyamine catabolic process
GO:0016491 F oxidoreductase activity
GO:0046208 P spermine catabolic process
GO:0046592 F polyamine oxidase activity
GO:0052894 F norspermine:oxygen oxidoreductase activity
GO:0052895 F N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity
GO:0052901 F spermine:oxygen oxidoreductase (spermidine-forming) activity
GO:0055114 P obsolete oxidation-reduction process
19 O_BomoFB10017_complete:A_BomoFB_comp9676_c0_seq1
145bp
 PREDICTED:_probable_polyamine_oxidase_5_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0008215 P spermine metabolic process
GO:0016491 F oxidoreductase activity
GO:0052899 F N(1),N(12)-diacetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity
GO:0052901 F spermine:oxygen oxidoreductase (spermidine-forming) activity
GO:0052902 F spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity
GO:0052903 F N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity
GO:0052904 F N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity
GO:0055114 P obsolete oxidation-reduction process
20 O_BomoFB10018_complete:A_BomoFB_comp9676_c0_seq2
466bp
 PREDICTED:_probable_polyamine_oxidase_5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006598 P polyamine catabolic process
GO:0016491 F oxidoreductase activity
GO:0046208 P spermine catabolic process
GO:0046592 F polyamine oxidase activity
GO:0052894 F norspermine:oxygen oxidoreductase activity
GO:0052895 F N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity
GO:0052901 F spermine:oxygen oxidoreductase (spermidine-forming) activity
GO:0055114 P obsolete oxidation-reduction process
21 O_BomoFB10019_5prime_partial:A_BomoFB_comp9676_c1_seq1
215bp
 PREDICTED:_ras-related_protein_Rab-24-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006914 P autophagy
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
22 O_BomoFB1001_5prime_partial:A_BomoFB_comp2803_c0_seq1
793bp
 PREDICTED:_myb-binding_protein_1A-like_protein_[Amyelois_transitella]
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001649 P osteoblast differentiation
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006913 P nucleocytoplasmic transport
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0022904 P respiratory electron transport chain
GO:0032922 P circadian regulation of gene expression
GO:0042149 P cellular response to glucose starvation
GO:0042564 C NLS-dependent protein nuclear import complex
GO:0043231 C intracellular membrane-bounded organelle
GO:0043565 F sequence-specific DNA binding
GO:0044822 F RNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:0071158 P regulation of cell cycle
GO:0071897 P DNA biosynthetic process
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:2000210 P positive regulation of anoikis
23 O_BomoFB10020_3prime_partial:A_BomoFB_comp9677_c0_seq1
413bp
 PREDICTED:_phosphatidylinositol-binding_clathrin_assembly_protein_LAP_[Bombyx_mori]
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007270 P neuron-neuron synaptic transmission
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016183 P synaptic vesicle coating
GO:0030131 C clathrin adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030276 F clathrin binding
GO:0031410 C cytoplasmic vesicle
GO:0042331 P phototaxis
GO:0048268 P clathrin coat assembly
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:2000370 P positive regulation of clathrin-dependent endocytosis
24 O_BomoFB10021_3prime_partial:A_BomoFB_comp9677_c0_seq2
401bp
 PREDICTED:_phosphatidylinositol-binding_clathrin_assembly_protein_LAP_[Bombyx_mori]
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007270 P neuron-neuron synaptic transmission
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016183 P synaptic vesicle coating
GO:0030131 C clathrin adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030276 F clathrin binding
GO:0031410 C cytoplasmic vesicle
GO:0042331 P phototaxis
GO:0048268 P clathrin coat assembly
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:2000370 P positive regulation of clathrin-dependent endocytosis
25 O_BomoFB10022_3prime_partial:A_BomoFB_comp9677_c0_seq3
420bp
 PREDICTED:_phosphatidylinositol-binding_clathrin_assembly_protein_LAP_[Bombyx_mori]
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007270 P neuron-neuron synaptic transmission
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016183 P synaptic vesicle coating
GO:0030131 C clathrin adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030276 F clathrin binding
GO:0031410 C cytoplasmic vesicle
GO:0042331 P phototaxis
GO:0048268 P clathrin coat assembly
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:2000370 P positive regulation of clathrin-dependent endocytosis
26 O_BomoFB10023_3prime_partial:A_BomoFB_comp9677_c0_seq4
394bp
 PREDICTED:_phosphatidylinositol-binding_clathrin_assembly_protein_LAP_[Bombyx_mori]
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007270 P neuron-neuron synaptic transmission
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016183 P synaptic vesicle coating
GO:0030131 C clathrin adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030276 F clathrin binding
GO:0031410 C cytoplasmic vesicle
GO:0042331 P phototaxis
GO:0048268 P clathrin coat assembly
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:2000370 P positive regulation of clathrin-dependent endocytosis
27 O_BomoFB10024_5prime_partial:A_BomoFB_comp9678_c0_seq1
416bp
 PREDICTED:_uncharacterized_protein_K02A2.6-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
28 O_BomoFB10025_internal:A_BomoFB_comp9679_c0_seq1
703bp
 PREDICTED:_microtubule-actin_cross-linking_factor_1,_isoforms_1/2/3/5_[Amyelois_transitella]
GO:0000226 P microtubule cytoskeleton organization
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005604 C basement membrane
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005882 C intermediate filament
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0005938 C cell cortex
GO:0007010 P cytoskeleton organization
GO:0007050 P regulation of cell cycle
GO:0007155 P cell adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0008022 F protein C-terminus binding
GO:0008092 F cytoskeletal protein binding
GO:0009611 P response to wounding
GO:0009925 C basal plasma membrane
GO:0015629 C actin cytoskeleton
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0030011 P maintenance of cell polarity
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030056 C hemidesmosome
GO:0030424 C axon
GO:0031252 C cell leading edge
GO:0031581 P hemidesmosome assembly
GO:0031673 C H zone
GO:0035371 C microtubule plus-end
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0045104 P intermediate filament cytoskeleton organization
GO:0045111 C intermediate filament cytoskeleton
GO:0046872 F metal ion binding
GO:0048870 P cell motility
GO:0051010 F microtubule plus-end binding
GO:0070062 C extracellular exosome
29 O_BomoFB10026_complete:A_BomoFB_comp9679_c0_seq1
209bp
 mechanosensitive_ion_channel_protein_MscS_[Lysobacter_enzymogenes]
30 O_BomoFB10027_5prime_partial:A_BomoFB_comp9679_c0_seq1
118bp
 hypothetical_protein_ALC56_09687_[Trachymyrmex_septentrionalis]
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