SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/25536
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
31 O_BomoFB10028_3prime_partial:A_BomoFB_comp9679_c0_seq1
116bp
32 O_BomoFB10029_5prime_partial:A_BomoFB_comp9679_c0_seq1
115bp
33 O_BomoFB1002_5prime_partial:A_BomoFB_comp2803_c0_seq1
180bp
 PREDICTED:_adenylate_cyclase_type_5_[Otolemur_garnettii]
34 O_BomoFB10030_5prime_partial:A_BomoFB_comp9680_c0_seq1
691bp
 PREDICTED:_calcium-binding_mitochondrial_carrier_protein_Aralar1_isoform_X2_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005509 F calcium ion binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005811 C lipid droplet
GO:0006412 P translation
GO:0006810 P transport
GO:0006839 P mitochondrial transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0031966 C mitochondrial membrane
GO:0042060 P wound healing
GO:0046872 F metal ion binding
GO:0055085 P transmembrane transport
35 O_BomoFB10031_complete:A_BomoFB_comp9680_c0_seq1
170bp
 pyruvate-flavodoxin_oxidoreductase_[Anaerotruncus_sp._CAG:528]
36 O_BomoFB10032_complete:A_BomoFB_comp9680_c0_seq2
683bp
 PREDICTED:_calcium-binding_mitochondrial_carrier_protein_Aralar1_isoform_X2_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005509 F calcium ion binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005811 C lipid droplet
GO:0006412 P translation
GO:0006810 P transport
GO:0006839 P mitochondrial transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0031966 C mitochondrial membrane
GO:0042060 P wound healing
GO:0046872 F metal ion binding
GO:0055085 P transmembrane transport
37 O_BomoFB10033_complete:A_BomoFB_comp9680_c0_seq2
170bp
 pyruvate-flavodoxin_oxidoreductase_[Anaerotruncus_sp._CAG:528]
38 O_BomoFB10034_3prime_partial:A_BomoFB_comp9681_c0_seq1
169bp
 PREDICTED:_homeotic_protein_female_sterile_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
39 O_BomoFB10035_3prime_partial:A_BomoFB_comp9681_c0_seq2
190bp
 PREDICTED:_homeotic_protein_female_sterile_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
40 O_BomoFB10036_5prime_partial:A_BomoFB_comp9683_c0_seq1
321bp
 D-arabinose_1-dehydrogenase_[Papilio_xuthus]
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006012 P galactose metabolic process
GO:0010349 F L-galactose dehydrogenase activity
GO:0016491 F oxidoreductase activity
GO:0019853 P L-ascorbic acid biosynthetic process
GO:0055114 P obsolete oxidation-reduction process
41 O_BomoFB10037_5prime_partial:A_BomoFB_comp9683_c0_seq2
343bp
 D-arabinose_1-dehydrogenase_[Papilio_xuthus]
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006012 P galactose metabolic process
GO:0010349 F L-galactose dehydrogenase activity
GO:0016491 F oxidoreductase activity
GO:0019853 P L-ascorbic acid biosynthetic process
GO:0055114 P obsolete oxidation-reduction process
42 O_BomoFB10038_5prime_partial:A_BomoFB_comp9684_c0_seq1
399bp
 PREDICTED:_dystroglycan_isoform_X4_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0042383 C sarcolemma
GO:0043236 F laminin binding
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
43 O_BomoFB10039_complete:A_BomoFB_comp9684_c0_seq1
116bp
 hypothetical_protein_ENH_00048960_[Eimeria_necatrix]
44 O_BomoFB1003_complete:A_BomoFB_comp2804_c0_seq1
1041bp
 putative_Ofd1_protein_[Operophtera_brumata]
45 O_BomoFB10040_complete:A_BomoFB_comp9684_c0_seq1
106bp
 exonuclease_family_protein,_partial_[Escherichia_coli_DEC10C]
46 O_BomoFB10041_3prime_partial:A_BomoFB_comp9684_c0_seq2
104bp
 PREDICTED:_NAC_domain-containing_protein_72-like_[Citrus_sinensis]
47 O_BomoFB10042_complete:A_BomoFB_comp9685_c1_seq1
246bp
 PREDICTED:_ER_membrane_protein_complex_subunit_3_[Papilio_machaon]
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030140 C trans-Golgi network transport vesicle
GO:0034975 P protein folding in endoplasmic reticulum
GO:0045494 P photoreceptor cell maintenance
GO:0060041 P retina development in camera-type eye
GO:0072546 C EMC complex
48 O_BomoFB10043_complete:A_BomoFB_comp9686_c0_seq1
265bp
 PREDICTED:_lys-63-specific_deubiquitinase_BRCC36-like_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006302 P double-strand break repair
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0070531 C BRCA1-A complex
GO:0070536 P protein K63-linked deubiquitination
GO:0070537 P histone H2A K63-linked deubiquitination
GO:0070552 C BRISC complex
49 O_BomoFB10044_complete:A_BomoFB_comp9686_c0_seq1
156bp
50 O_BomoFB10045_complete:A_BomoFB_comp9686_c0_seq2
265bp
 PREDICTED:_lys-63-specific_deubiquitinase_BRCC36-like_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006302 P double-strand break repair
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0070531 C BRCA1-A complex
GO:0070536 P protein K63-linked deubiquitination
GO:0070537 P histone H2A K63-linked deubiquitination
GO:0070552 C BRISC complex
51 O_BomoFB10046_5prime_partial:A_BomoFB_comp9686_c0_seq2
198bp
 PREDICTED:_uncharacterized_protein_LOC105841433_[Bombyx_mori]
52 O_BomoFB10047_complete:A_BomoFB_comp9686_c0_seq2
122bp
 hypothetical_protein,_conserved_[Trypanosoma_brucei_gambiense_DAL972]
53 O_BomoFB10048_complete:A_BomoFB_comp9686_c0_seq3
265bp
 PREDICTED:_lys-63-specific_deubiquitinase_BRCC36-like_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006302 P double-strand break repair
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0070531 C BRCA1-A complex
GO:0070536 P protein K63-linked deubiquitination
GO:0070537 P histone H2A K63-linked deubiquitination
GO:0070552 C BRISC complex
54 O_BomoFB10049_complete:A_BomoFB_comp9686_c0_seq3
127bp
 hypothetical_protein,_conserved_[Trypanosoma_brucei_gambiense_DAL972]
55 O_BomoFB1004_5prime_partial:A_BomoFB_comp2805_c0_seq1
185bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_E2/E3_hybrid_ubiquitin-protein_ligase_UBE2O_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006513 P protein monoubiquitination
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0030513 P positive regulation of BMP signaling pathway
GO:0031625 F ubiquitin protein ligase binding
GO:0042147 P retrograde transport, endosome to Golgi
GO:0044822 F RNA binding
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:0070534 P protein K63-linked ubiquitination
56 O_BomoFB10050_complete:A_BomoFB_comp9686_c0_seq4
265bp
 PREDICTED:_lys-63-specific_deubiquitinase_BRCC36-like_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006302 P double-strand break repair
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0070531 C BRCA1-A complex
GO:0070536 P protein K63-linked deubiquitination
GO:0070537 P histone H2A K63-linked deubiquitination
GO:0070552 C BRISC complex
57 O_BomoFB10051_internal:A_BomoFB_comp9687_c0_seq1
337bp
 PREDICTED:_uncharacterized_protein_LOC106137322_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
58 O_BomoFB10052_complete:A_BomoFB_comp9689_c0_seq1
444bp
 PREDICTED:_endophilin-A_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0042171 F lysophosphatidic acid acyltransferase activity
GO:0048488 P synaptic vesicle endocytosis
GO:0050803 P regulation of synapse structure or activity
59 O_BomoFB10053_complete:A_BomoFB_comp9690_c0_seq1
684bp
 PREDICTED:_ankyrin_repeat_and_zinc_finger_domain-containing_protein_1-like_isoform_X4_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
60 O_BomoFB10054_complete:A_BomoFB_comp9690_c0_seq2
114bp
 PREDICTED:_ankyrin_repeat_and_zinc_finger_domain-containing_protein_1-like_isoform_X4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0022625 C cytosolic large ribosomal subunit
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0046872 F metal ion binding
previous next from show/25536

- SilkBase 1999-2023 -