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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9871 O_BomoEE18886_complete:A_BomoEE_comp69568_c0_seq4
202bp
 PREDICTED:_bromodomain-containing_protein_7_[Bombyx_mori]
GO:0002039 F p53 binding
GO:0003713 F transcription coactivator activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0016055 P Wnt signaling pathway
GO:0035066 P positive regulation of histone acetylation
GO:0042393 F histone binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0070577 F lysine-acetylated histone binding
GO:0090544 C SWI/SNF superfamily-type complex
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
9872 O_BomoEE18887_complete:A_BomoEE_comp69568_c0_seq4
157bp
9873 O_BomoEE18888_complete:A_BomoEE_comp69568_c0_seq4
140bp
9874 O_BomoEE18889_5prime_partial:A_BomoEE_comp69569_c0_seq1
100bp
9875 O_BomoEE1888_5prime_partial:A_BomoEE_comp33025_c0_seq1
109bp
9876 O_BomoEE18890_3prime_partial:A_BomoEE_comp69569_c0_seq2
242bp
 PREDICTED:_2-phosphoxylose_phosphatase_1_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0003993 F acid phosphatase activity
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0010909 P positive regulation of heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0050650 P chondroitin sulfate proteoglycan biosynthetic process
9877 O_BomoEE18891_5prime_partial:A_BomoEE_comp69569_c0_seq2
100bp
9878 O_BomoEE18892_complete:A_BomoEE_comp69569_c0_seq3
138bp
 PREDICTED:_2-phosphoxylose_phosphatase_1_[Amyelois_transitella]
9879 O_BomoEE18893_complete:A_BomoEE_comp69570_c1_seq3
319bp
 PREDICTED:_graves_disease_carrier_protein-like_isoform_X2_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
9880 O_BomoEE18894_complete:A_BomoEE_comp69570_c1_seq3
100bp
9881 O_BomoEE18895_complete:A_BomoEE_comp69570_c1_seq4
319bp
 PREDICTED:_graves_disease_carrier_protein-like_isoform_X2_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
9882 O_BomoEE18896_complete:A_BomoEE_comp69570_c1_seq4
100bp
9883 O_BomoEE18897_complete:A_BomoEE_comp69573_c0_seq1
302bp
 Elav_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0005938 C cell cortex
GO:0007275 P multicellular organism development
GO:0030529 C ribonucleoprotein complex
9884 O_BomoEE18898_complete:A_BomoEE_comp69573_c4_seq2
764bp
 Cullin-5_[Papilio_machaon]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0004842 F ubiquitin-protein transferase activity
GO:0004872 F signaling receptor activity
GO:0005262 F calcium channel activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007050 P regulation of cell cycle
GO:0008283 P cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031466 C Cul5-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0038128 P ERBB2 signaling pathway
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070588 P calcium ion transmembrane transport
GO:0097193 P intrinsic apoptotic signaling pathway
9885 O_BomoEE18899_complete:A_BomoEE_comp69573_c4_seq3
192bp
 PREDICTED:_cullin-5_[Papilio_machaon]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0004842 F ubiquitin-protein transferase activity
GO:0004872 F signaling receptor activity
GO:0005262 F calcium channel activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007050 P regulation of cell cycle
GO:0008283 P cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031466 C Cul5-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0038128 P ERBB2 signaling pathway
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070588 P calcium ion transmembrane transport
GO:0097193 P intrinsic apoptotic signaling pathway
9886 O_BomoEE1889_complete:A_BomoEE_comp33033_c0_seq1
109bp
 PREDICTED:_UPF0562_protein_C7orf55_[Amyelois_transitella]
GO:0005739 C mitochondrion
9887 O_BomoEE188_complete:A_BomoEE_comp2962_c1_seq1
108bp
9888 O_BomoEE18900_complete:A_BomoEE_comp69573_c4_seq4
176bp
 Cullin-5_[Papilio_xuthus]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0004842 F ubiquitin-protein transferase activity
GO:0004872 F signaling receptor activity
GO:0005262 F calcium channel activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007050 P regulation of cell cycle
GO:0008283 P cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031466 C Cul5-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0038128 P ERBB2 signaling pathway
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070588 P calcium ion transmembrane transport
GO:0097193 P intrinsic apoptotic signaling pathway
9889 O_BomoEE18901_complete:A_BomoEE_comp69573_c4_seq5
780bp
 PREDICTED:_cullin-5_[Papilio_machaon]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0004842 F ubiquitin-protein transferase activity
GO:0004872 F signaling receptor activity
GO:0005262 F calcium channel activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007050 P regulation of cell cycle
GO:0008283 P cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031466 C Cul5-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0038128 P ERBB2 signaling pathway
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070588 P calcium ion transmembrane transport
GO:0097193 P intrinsic apoptotic signaling pathway
9890 O_BomoEE18902_complete:A_BomoEE_comp69574_c0_seq1
239bp
 PREDICTED:_upstream_stimulatory_factor_2_[Plutella_xylostella]
GO:0000432 P positive regulation of transcription from RNA polymerase II promoter by glucose
GO:0001666 P response to hypoxia
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0009411 P response to UV
GO:0019086 P late viral transcription
GO:0019899 F enzyme binding
GO:0019901 F protein kinase binding
GO:0032869 P cellular response to insulin stimulus
GO:0042803 F protein homodimerization activity
GO:0042826 F histone deacetylase binding
GO:0043425 F bHLH transcription factor binding
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0055088 P lipid homeostasis
9891 O_BomoEE18903_complete:A_BomoEE_comp69574_c0_seq2
244bp
 PREDICTED:_upstream_stimulatory_factor_2_[Plutella_xylostella]
GO:0000430 P regulation of transcription from RNA polymerase II promoter by glucose
GO:0000432 P positive regulation of transcription from RNA polymerase II promoter by glucose
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007595 P lactation
GO:0019086 P late viral transcription
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043425 F bHLH transcription factor binding
GO:0043565 F sequence-specific DNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0055088 P lipid homeostasis
9892 O_BomoEE18904_complete:A_BomoEE_comp69575_c0_seq1
297bp
 PREDICTED:_NIF3-like_protein_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
9893 O_BomoEE18905_complete:A_BomoEE_comp69575_c0_seq2
337bp
 PREDICTED:_probable_cytosolic_iron-sulfur_protein_assembly_protein_Ciao1_isoform_X1_[Amyelois_transitella]
GO:0016226 P iron-sulfur cluster assembly
GO:0097361 C CIA complex
9894 O_BomoEE18906_complete:A_BomoEE_comp69575_c0_seq2
297bp
 PREDICTED:_NIF3-like_protein_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
9895 O_BomoEE18907_complete:A_BomoEE_comp69575_c0_seq2
108bp
9896 O_BomoEE18908_complete:A_BomoEE_comp69575_c0_seq3
297bp
 PREDICTED:_NIF3-like_protein_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
9897 O_BomoEE18909_complete:A_BomoEE_comp69575_c0_seq3
157bp
 PREDICTED:_probable_cytosolic_iron-sulfur_protein_assembly_protein_Ciao1_isoform_X1_[Papilio_xuthus]
GO:0016226 P iron-sulfur cluster assembly
GO:0097361 C CIA complex
9898 O_BomoEE1890_complete:A_BomoEE_comp33033_c0_seq2
277bp
 PREDICTED:_SRR1-like_protein_[Amyelois_transitella]
GO:0048511 P rhythmic process
9899 O_BomoEE18910_complete:A_BomoEE_comp69575_c0_seq3
108bp
9900 O_BomoEE18911_complete:A_BomoEE_comp69575_c0_seq4
297bp
 PREDICTED:_NIF3-like_protein_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
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