SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/95730
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8401 O_BomoEE17562_complete:A_BomoEE_comp69021_c0_seq1
1168bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
8402 O_BomoEE17563_complete:A_BomoEE_comp69021_c0_seq1
284bp
8403 O_BomoEE17564_complete:A_BomoEE_comp69021_c0_seq1
195bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
GO:0030518 P intracellular steroid hormone receptor signaling pathway
GO:0070847 C core mediator complex
8404 O_BomoEE17565_complete:A_BomoEE_comp69021_c0_seq1
175bp
8405 O_BomoEE17566_complete:A_BomoEE_comp69021_c0_seq1
114bp
8406 O_BomoEE17567_complete:A_BomoEE_comp69021_c0_seq1
110bp
8407 O_BomoEE17568_complete:A_BomoEE_comp69021_c0_seq1
107bp
8408 O_BomoEE17569_complete:A_BomoEE_comp69021_c0_seq2
865bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
8409 O_BomoEE1756_complete:A_BomoEE_comp32655_c0_seq1
277bp
8410 O_BomoEE17570_complete:A_BomoEE_comp69021_c0_seq2
284bp
8411 O_BomoEE17571_complete:A_BomoEE_comp69021_c0_seq2
175bp
8412 O_BomoEE17572_complete:A_BomoEE_comp69021_c0_seq2
114bp
8413 O_BomoEE17573_complete:A_BomoEE_comp69021_c0_seq3
1378bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_14_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
8414 O_BomoEE17574_complete:A_BomoEE_comp69021_c0_seq3
284bp
8415 O_BomoEE17575_complete:A_BomoEE_comp69021_c0_seq3
175bp
8416 O_BomoEE17576_complete:A_BomoEE_comp69021_c0_seq3
114bp
8417 O_BomoEE17577_complete:A_BomoEE_comp69021_c0_seq3
110bp
8418 O_BomoEE17578_complete:A_BomoEE_comp69021_c0_seq3
107bp
8419 O_BomoEE17579_5prime_partial:A_BomoEE_comp69023_c0_seq1
404bp
 PREDICTED:_ATP-binding_cassette_sub-family_F_member_1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006413 P translational initiation
GO:0008494 F translation activator activity
GO:0016887 F ATP hydrolysis activity
GO:0042254 P ribosome biogenesis
GO:0042788 C polysomal ribosome
GO:0043022 F ribosome binding
GO:0045727 P positive regulation of translation
8420 O_BomoEE1757_complete:A_BomoEE_comp32655_c0_seq1
210bp
8421 O_BomoEE17580_complete:A_BomoEE_comp69023_c0_seq1
139bp
 Os09g0572450_[Oryza_sativa_Japonica_Group]
8422 O_BomoEE17581_internal:A_BomoEE_comp69023_c1_seq1
519bp
 PREDICTED:_ATP-binding_cassette_sub-family_F_member_1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006413 P translational initiation
GO:0008494 F translation activator activity
GO:0016887 F ATP hydrolysis activity
GO:0042254 P ribosome biogenesis
GO:0042788 C polysomal ribosome
GO:0043022 F ribosome binding
GO:0045727 P positive regulation of translation
8423 O_BomoEE17582_complete:A_BomoEE_comp69023_c1_seq1
222bp
8424 O_BomoEE17583_internal:A_BomoEE_comp69023_c1_seq2
561bp
 PREDICTED:_ATP-binding_cassette_sub-family_F_member_1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006413 P translational initiation
GO:0008494 F translation activator activity
GO:0016887 F ATP hydrolysis activity
GO:0042254 P ribosome biogenesis
GO:0042788 C polysomal ribosome
GO:0043022 F ribosome binding
GO:0045727 P positive regulation of translation
8425 O_BomoEE17584_complete:A_BomoEE_comp69023_c1_seq2
113bp
8426 O_BomoEE17585_3prime_partial:A_BomoEE_comp69027_c0_seq1
464bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_CYLD_isoform_X2_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030496 C midbody
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0036064 C ciliary basal body
GO:0036459 F thiol-dependent deubiquitinase
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0042995 C cell projection
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0070536 P protein K63-linked deubiquitination
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0097542 C ciliary tip
GO:1902017 P regulation of cilium assembly
8427 O_BomoEE17586_3prime_partial:A_BomoEE_comp69027_c0_seq2
483bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_CYLD_isoform_X1_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0007346 P regulation of mitotic cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010803 P regulation of tumor necrosis factor-mediated signaling pathway
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0019901 F protein kinase binding
GO:0030496 C midbody
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0032480 P negative regulation of type I interferon production
GO:0036064 C ciliary basal body
GO:0036459 F thiol-dependent deubiquitinase
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0042995 C cell projection
GO:0045581 P negative regulation of T cell differentiation
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0061578 F Lys63-specific deubiquitinase activity
GO:0070064 F proline-rich region binding
GO:0070266 P necroptotic process
GO:0070423 P nucleotide-binding oligomerization domain containing signaling pathway
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:0070536 P protein K63-linked deubiquitination
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0097542 C ciliary tip
GO:1901026 P ripoptosome assembly involved in necroptotic process
GO:1902017 P regulation of cilium assembly
GO:2001238 P positive regulation of extrinsic apoptotic signaling pathway
GO:2001242 P regulation of intrinsic apoptotic signaling pathway
8428 O_BomoEE17587_3prime_partial:A_BomoEE_comp69027_c0_seq3
483bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_CYLD_isoform_X1_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0007346 P regulation of mitotic cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010803 P regulation of tumor necrosis factor-mediated signaling pathway
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0019901 F protein kinase binding
GO:0030496 C midbody
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0032480 P negative regulation of type I interferon production
GO:0036064 C ciliary basal body
GO:0036459 F thiol-dependent deubiquitinase
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0042995 C cell projection
GO:0045581 P negative regulation of T cell differentiation
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0061578 F Lys63-specific deubiquitinase activity
GO:0070064 F proline-rich region binding
GO:0070266 P necroptotic process
GO:0070423 P nucleotide-binding oligomerization domain containing signaling pathway
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:0070536 P protein K63-linked deubiquitination
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0097542 C ciliary tip
GO:1901026 P ripoptosome assembly involved in necroptotic process
GO:1902017 P regulation of cilium assembly
GO:2001238 P positive regulation of extrinsic apoptotic signaling pathway
GO:2001242 P regulation of intrinsic apoptotic signaling pathway
8429 O_BomoEE17588_3prime_partial:A_BomoEE_comp69027_c0_seq4
438bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_CYLD_isoform_X3_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0007346 P regulation of mitotic cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010803 P regulation of tumor necrosis factor-mediated signaling pathway
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0019901 F protein kinase binding
GO:0030496 C midbody
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0032480 P negative regulation of type I interferon production
GO:0036064 C ciliary basal body
GO:0036459 F thiol-dependent deubiquitinase
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0042995 C cell projection
GO:0045581 P negative regulation of T cell differentiation
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0061578 F Lys63-specific deubiquitinase activity
GO:0070064 F proline-rich region binding
GO:0070266 P necroptotic process
GO:0070423 P nucleotide-binding oligomerization domain containing signaling pathway
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:0070536 P protein K63-linked deubiquitination
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0097542 C ciliary tip
GO:1901026 P ripoptosome assembly involved in necroptotic process
GO:1902017 P regulation of cilium assembly
GO:2001238 P positive regulation of extrinsic apoptotic signaling pathway
GO:2001242 P regulation of intrinsic apoptotic signaling pathway
8430 O_BomoEE17589_5prime_partial:A_BomoEE_comp69029_c0_seq2
189bp
 PREDICTED:_protein_TERMINAL_FLOWER_1-like_[Bombyx_mori]
GO:0003712 F transcription coregulator activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005773 C vacuole
GO:0005886 C plasma membrane
GO:0006623 P protein targeting to vacuole
GO:0007275 P multicellular organism development
GO:0009744 P response to sucrose
GO:0009908 P flower development
GO:0009910 P negative regulation of flower development
GO:0030154 P cell differentiation
GO:0031982 C vesicle
GO:0090344 P negative regulation of cell aging
GO:1903506 P regulation of nucleic acid-templated transcription
previous next from show/95730

- SilkBase 1999-2023 -