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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6691 O_BomoEE16022_complete:A_BomoEE_comp68367_c0_seq4
114bp
6692 O_BomoEE16023_complete:A_BomoEE_comp68367_c0_seq5
140bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_F_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
6693 O_BomoEE16024_complete:A_BomoEE_comp68368_c0_seq1
543bp
 PREDICTED:_protein_KRI1_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6694 O_BomoEE16025_complete:A_BomoEE_comp68368_c0_seq1
156bp
6695 O_BomoEE16026_3prime_partial:A_BomoEE_comp68368_c0_seq2
570bp
 PREDICTED:_protein_KRI1_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6696 O_BomoEE16027_complete:A_BomoEE_comp68368_c0_seq2
156bp
6697 O_BomoEE16028_complete:A_BomoEE_comp68368_c0_seq3
791bp
 PREDICTED:_protein_KRI1_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6698 O_BomoEE16029_complete:A_BomoEE_comp68368_c0_seq3
156bp
6699 O_BomoEE1602_complete:A_BomoEE_comp32231_c0_seq2
136bp
6700 O_BomoEE16030_complete:A_BomoEE_comp68368_c0_seq3
116bp
6701 O_BomoEE16031_complete:A_BomoEE_comp68368_c0_seq4
543bp
 PREDICTED:_protein_KRI1_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6702 O_BomoEE16032_complete:A_BomoEE_comp68368_c0_seq4
156bp
6703 O_BomoEE16033_complete:A_BomoEE_comp68368_c0_seq4
116bp
6704 O_BomoEE16034_complete:A_BomoEE_comp68368_c0_seq5
518bp
 PREDICTED:_protein_KRI1_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6705 O_BomoEE16035_complete:A_BomoEE_comp68368_c0_seq5
156bp
6706 O_BomoEE16036_complete:A_BomoEE_comp68368_c0_seq5
116bp
6707 O_BomoEE16037_complete:A_BomoEE_comp68368_c0_seq6
766bp
 PREDICTED:_protein_KRI1_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6708 O_BomoEE16038_complete:A_BomoEE_comp68368_c0_seq6
156bp
6709 O_BomoEE16039_complete:A_BomoEE_comp68368_c0_seq6
116bp
6710 O_BomoEE1603_complete:A_BomoEE_comp32233_c0_seq1
601bp
 PREDICTED:_putative_RNA_polymerase_II_subunit_B1_CTD_phosphatase_RPAP2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004721 F phosphoprotein phosphatase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0008420 F RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0009301 P snRNA transcription
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
6711 O_BomoEE16040_3prime_partial:A_BomoEE_comp68368_c0_seq7
595bp
 PREDICTED:_protein_KRI1_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6712 O_BomoEE16041_complete:A_BomoEE_comp68368_c0_seq7
156bp
6713 O_BomoEE16042_complete:A_BomoEE_comp68368_c0_seq8
518bp
 PREDICTED:_protein_KRI1_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
6714 O_BomoEE16043_complete:A_BomoEE_comp68368_c0_seq8
156bp
6715 O_BomoEE16044_complete:A_BomoEE_comp68370_c0_seq1
220bp
 PREDICTED:_trafficking_kinesin-binding_protein_milt_isoform_X5_[Bombyx_mori]
6716 O_BomoEE16045_complete:A_BomoEE_comp68370_c0_seq1
111bp
6717 O_BomoEE16046_complete:A_BomoEE_comp68370_c0_seq1
110bp
6718 O_BomoEE16047_5prime_partial:A_BomoEE_comp68370_c0_seq2
637bp
 PREDICTED:_trafficking_kinesin-binding_protein_milt_isoform_X2_[Bombyx_mori]
GO:0003777 F microtubule motor activity
GO:0005515 F protein binding
GO:0005623 C obsolete cell
GO:0005739 C mitochondrion
GO:0007287 P Nebenkern assembly
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0017022 F myosin binding
GO:0019233 P sensory perception of pain
GO:0019895 F obsolete kinesin-associated mitochondrial adaptor activity
GO:0019896 P axonal transport of mitochondrion
GO:0030382 P sperm mitochondrion organization
GO:0048311 P mitochondrion distribution
GO:0051654 P establishment of mitochondrion localization
GO:1904115 C axon cytoplasm
6719 O_BomoEE16048_complete:A_BomoEE_comp68370_c0_seq2
178bp
6720 O_BomoEE16049_complete:A_BomoEE_comp68370_c0_seq2
147bp
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