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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3511 O_BomoEE13160_5prime_partial:A_BomoEE_comp66722_c0_seq1
125bp
3512 O_BomoEE13161_5prime_partial:A_BomoEE_comp66722_c0_seq2
100bp
3513 O_BomoEE13162_5prime_partial:A_BomoEE_comp66722_c0_seq3
100bp
3514 O_BomoEE13163_complete:A_BomoEE_comp66723_c0_seq1
170bp
 Von_Hippel-Lindau_disease_tumor_suppressor_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000902 P cell morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0019899 F enzyme binding
GO:0030891 C VCB complex
GO:0043066 P negative regulation of apoptotic process
GO:0045597 P positive regulation of cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050821 P protein stabilization
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061428 P negative regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061630 F ubiquitin protein ligase activity
3515 O_BomoEE13164_complete:A_BomoEE_comp66723_c0_seq2
170bp
 Von_Hippel-Lindau_disease_tumor_suppressor_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000902 P cell morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0019899 F enzyme binding
GO:0030891 C VCB complex
GO:0043066 P negative regulation of apoptotic process
GO:0045597 P positive regulation of cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050821 P protein stabilization
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061428 P negative regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061630 F ubiquitin protein ligase activity
3516 O_BomoEE13165_complete:A_BomoEE_comp66723_c0_seq2
156bp
 PREDICTED:_trafficking_protein_particle_complex_subunit_2-like_protein_[Papilio_polytes]
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0048471 C perinuclear region of cytoplasm
3517 O_BomoEE13166_complete:A_BomoEE_comp66723_c0_seq3
170bp
 Von_Hippel-Lindau_disease_tumor_suppressor_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000902 P cell morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0019899 F enzyme binding
GO:0030891 C VCB complex
GO:0043066 P negative regulation of apoptotic process
GO:0045597 P positive regulation of cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050821 P protein stabilization
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061428 P negative regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061630 F ubiquitin protein ligase activity
3518 O_BomoEE13167_5prime_partial:A_BomoEE_comp66727_c2_seq3
143bp
 PREDICTED:_uncharacterized_protein_C18orf8_[Bombyx_mori]
GO:0005765 C lysosomal membrane
3519 O_BomoEE13168_5prime_partial:A_BomoEE_comp66727_c2_seq5
127bp
 PREDICTED:_uncharacterized_protein_C18orf8_[Bombyx_mori]
GO:0005765 C lysosomal membrane
3520 O_BomoEE13169_5prime_partial:A_BomoEE_comp66727_c2_seq6
119bp
 PREDICTED:_uncharacterized_protein_C18orf8_[Bombyx_mori]
GO:0005765 C lysosomal membrane
3521 O_BomoEE1316_5prime_partial:A_BomoEE_comp28737_c0_seq1
169bp
 PREDICTED:_uncharacterized_protein_LOC105841330_[Bombyx_mori]
GO:0005267 F potassium channel activity
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0006936 P muscle contraction
GO:0015271 F outward rectifier potassium channel activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022841 F potassium ion leak channel activity
GO:0030322 P stabilization of membrane potential
GO:0040011 P locomotion
GO:0071805 P potassium ion transmembrane transport
3522 O_BomoEE13170_5prime_partial:A_BomoEE_comp66727_c2_seq8
143bp
 PREDICTED:_uncharacterized_protein_C18orf8_[Bombyx_mori]
GO:0005765 C lysosomal membrane
3523 O_BomoEE13171_5prime_partial:A_BomoEE_comp66727_c2_seq10
119bp
 PREDICTED:_uncharacterized_protein_C18orf8_[Bombyx_mori]
GO:0005765 C lysosomal membrane
3524 O_BomoEE13172_complete:A_BomoEE_comp66730_c0_seq1
337bp
 PREDICTED:_uridine_phosphorylase_1-like_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004850 F uridine phosphorylase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006218 P uridine catabolic process
GO:0006220 P pyrimidine nucleotide metabolic process
GO:0009116 P nucleoside metabolic process
GO:0009166 P nucleotide catabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016763 F pentosyltransferase activity
GO:0042149 P cellular response to glucose starvation
GO:0043097 P pyrimidine nucleoside salvage
GO:0044206 P UMP salvage
GO:0046108 P uridine metabolic process
GO:0046135 P pyrimidine nucleoside catabolic process
3525 O_BomoEE13173_complete:A_BomoEE_comp66732_c0_seq1
223bp
 PREDICTED:_beta-1,4-galactosyltransferase_7_[Plutella_xylostella]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005975 P carbohydrate metabolic process
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006029 P proteoglycan metabolic process
GO:0006486 P protein glycosylation
GO:0006487 P protein N-linked glycosylation
GO:0008378 F galactosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030145 F manganese ion binding
GO:0031012 C extracellular matrix
GO:0032580 C Golgi cisterna membrane
GO:0043206 P supramolecular fiber organization
GO:0046525 F xylosylprotein 4-beta-galactosyltransferase activity
GO:0046872 F metal ion binding
GO:0048147 P negative regulation of fibroblast proliferation
3526 O_BomoEE13174_complete:A_BomoEE_comp66732_c0_seq2
304bp
 PREDICTED:_beta-1,4-galactosyltransferase_7_[Papilio_machaon]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005975 P carbohydrate metabolic process
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006029 P proteoglycan metabolic process
GO:0006486 P protein glycosylation
GO:0006487 P protein N-linked glycosylation
GO:0008378 F galactosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030145 F manganese ion binding
GO:0031012 C extracellular matrix
GO:0032580 C Golgi cisterna membrane
GO:0043206 P supramolecular fiber organization
GO:0046525 F xylosylprotein 4-beta-galactosyltransferase activity
GO:0046872 F metal ion binding
GO:0048147 P negative regulation of fibroblast proliferation
3527 O_BomoEE13175_complete:A_BomoEE_comp66732_c0_seq3
223bp
 PREDICTED:_beta-1,4-galactosyltransferase_7_[Plutella_xylostella]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005975 P carbohydrate metabolic process
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006029 P proteoglycan metabolic process
GO:0006486 P protein glycosylation
GO:0006487 P protein N-linked glycosylation
GO:0008378 F galactosyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030145 F manganese ion binding
GO:0031012 C extracellular matrix
GO:0032580 C Golgi cisterna membrane
GO:0043206 P supramolecular fiber organization
GO:0046525 F xylosylprotein 4-beta-galactosyltransferase activity
GO:0046872 F metal ion binding
GO:0048147 P negative regulation of fibroblast proliferation
3528 O_BomoEE13176_complete:A_BomoEE_comp66736_c0_seq2
117bp
3529 O_BomoEE13177_complete:A_BomoEE_comp66736_c0_seq4
117bp
3530 O_BomoEE13178_5prime_partial:A_BomoEE_comp66738_c0_seq1
165bp
 hypothetical_protein_KGM_13993_[Danaus_plexippus]
3531 O_BomoEE13179_5prime_partial:A_BomoEE_comp66738_c0_seq1
145bp
3532 O_BomoEE1317_5prime_partial:A_BomoEE_comp28785_c0_seq1
127bp
3533 O_BomoEE13180_complete:A_BomoEE_comp66738_c0_seq1
106bp
3534 O_BomoEE13181_complete:A_BomoEE_comp66744_c0_seq1
550bp
 Protein_TBRG4_[Papilio_xuthus]
GO:0004672 F protein kinase activity
GO:0005739 C mitochondrion
GO:0006468 P protein phosphorylation
GO:0045333 P cellular respiration
3535 O_BomoEE13182_complete:A_BomoEE_comp66744_c0_seq2
592bp
 Protein_TBRG4_[Papilio_xuthus]
GO:0004672 F protein kinase activity
GO:0005739 C mitochondrion
GO:0006468 P protein phosphorylation
GO:0045333 P cellular respiration
3536 O_BomoEE13183_complete:A_BomoEE_comp66749_c0_seq1
103bp
3537 O_BomoEE13184_complete:A_BomoEE_comp66750_c0_seq1
108bp
3538 O_BomoEE13185_5prime_partial:A_BomoEE_comp66754_c0_seq1
201bp
 hypothetical_protein_T4A_1359_[Trichinella_pseudospiralis]
3539 O_BomoEE13186_complete:A_BomoEE_comp66754_c0_seq1
138bp
 PREDICTED:_Bloom_syndrome_protein_homolog_isoform_X1_[Bombyx_mori]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000405 F bubble DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000729 P DNA double-strand break processing
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000733 P obsolete DNA strand renaturation
GO:0000781 C chromosome, telomeric region
GO:0000800 C lateral element
GO:0002039 F p53 binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0008026 F helicase activity
GO:0009378 F four-way junction helicase activity
GO:0010165 P response to X-ray
GO:0016363 C nuclear matrix
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0016925 P protein sumoylation
GO:0031297 P replication fork processing
GO:0032508 P DNA duplex unwinding
GO:0036310 F ATP-dependent DNA/DNA annealing activity
GO:0043140 F 3'-5' DNA helicase activity
GO:0044237 P cellular metabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045910 P negative regulation of DNA recombination
GO:0048478 P replication fork protection
GO:0051259 P protein complex oligomerization
GO:0051782 P negative regulation of cell division
GO:0051880 F G-quadruplex DNA binding
GO:0071479 P cellular response to ionizing radiation
GO:0072711 P cellular response to hydroxyurea
GO:0072757 P cellular response to camptothecin
GO:1901796 P regulation of signal transduction by p53 class mediator
3540 O_BomoEE13187_complete:A_BomoEE_comp66754_c0_seq2
520bp
 PREDICTED:_Bloom_syndrome_protein_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000403 F Y-form DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000733 P obsolete DNA strand renaturation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009378 F four-way junction helicase activity
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043140 F 3'-5' DNA helicase activity
GO:0044237 P cellular metabolic process
GO:0045003 P double-strand break repair via synthesis-dependent strand annealing
GO:1901291 P negative regulation of double-strand break repair via single-strand annealing
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