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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
331 O_BomoEE10299_5prime_partial:A_BomoEE_comp64082_c0_seq3
577bp
 PREDICTED:_zinc_finger_and_BTB_domain-containing_protein_41-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
332 O_BomoEE1029_3prime_partial:A_BomoEE_comp22776_c0_seq1
112bp
 glycoprotein_hormone_alpha_2_precursor_[Bombyx_mori]
GO:0005179 F hormone activity
GO:0005576 C extracellular region
GO:1903955 P positive regulation of protein targeting to mitochondrion
333 O_BomoEE102_3prime_partial:A_BomoEE_comp1906_c0_seq2
257bp
 PREDICTED:_craniofacial_development_protein_2-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
334 O_BomoEE10300_complete:A_BomoEE_comp64082_c0_seq3
230bp
335 O_BomoEE10301_complete:A_BomoEE_comp64082_c0_seq3
129bp
336 O_BomoEE10302_complete:A_BomoEE_comp64082_c0_seq4
643bp
 PREDICTED:_zinc_finger_and_BTB_domain-containing_protein_41-like_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
337 O_BomoEE10303_complete:A_BomoEE_comp64082_c0_seq4
230bp
338 O_BomoEE10304_complete:A_BomoEE_comp64082_c0_seq4
129bp
339 O_BomoEE10305_complete:A_BomoEE_comp64083_c0_seq1
347bp
 will_die_slowly_[Danaus_plexippus]
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005875 C microtubule associated complex
GO:0006338 P chromatin remodeling
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016573 P histone acetylation
GO:0022008 P neurogenesis
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0044545 C NSL complex
GO:0044665 C MLL1/2 complex
GO:0044666 C MLL3/4 complex
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
340 O_BomoEE10306_complete:A_BomoEE_comp64085_c0_seq1
215bp
 PREDICTED:_pleckstrin_homology_domain-containing_family_A_member_3-like_[Amyelois_transitella]
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005794 C Golgi apparatus
GO:0008289 F lipid binding
GO:0016020 C membrane
341 O_BomoEE10307_complete:A_BomoEE_comp64091_c1_seq1
291bp
 sex-lethal_isoform_S_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007548 P sex differentiation
GO:0030154 P cell differentiation
342 O_BomoEE10308_complete:A_BomoEE_comp64091_c1_seq2
337bp
 sex-lethal_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
343 O_BomoEE10309_complete:A_BomoEE_comp64091_c1_seq3
337bp
 sex-lethal_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
344 O_BomoEE1030_internal:A_BomoEE_comp22820_c0_seq1
133bp
 Retrotransposable_element_Tf2_155_kDa_protein_type_1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
345 O_BomoEE10310_complete:A_BomoEE_comp64092_c0_seq1
615bp
 PREDICTED:_GRIP_and_coiled-coil_domain-containing_protein_1_isoform_X2_[Amyelois_transitella]
GO:0000042 P protein localization to Golgi apparatus
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
346 O_BomoEE10311_complete:A_BomoEE_comp64092_c0_seq1
100bp
347 O_BomoEE10312_complete:A_BomoEE_comp64092_c0_seq2
615bp
 PREDICTED:_GRIP_and_coiled-coil_domain-containing_protein_1_isoform_X2_[Amyelois_transitella]
GO:0000042 P protein localization to Golgi apparatus
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
348 O_BomoEE10313_complete:A_BomoEE_comp64092_c0_seq2
100bp
349 O_BomoEE10314_complete:A_BomoEE_comp64092_c0_seq3
615bp
 PREDICTED:_GRIP_and_coiled-coil_domain-containing_protein_1_isoform_X2_[Amyelois_transitella]
GO:0000042 P protein localization to Golgi apparatus
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
350 O_BomoEE10315_complete:A_BomoEE_comp64092_c0_seq3
100bp
351 O_BomoEE10316_complete:A_BomoEE_comp64092_c0_seq4
615bp
 PREDICTED:_GRIP_and_coiled-coil_domain-containing_protein_1_isoform_X2_[Amyelois_transitella]
GO:0000042 P protein localization to Golgi apparatus
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
352 O_BomoEE10317_complete:A_BomoEE_comp64092_c0_seq4
100bp
353 O_BomoEE10318_complete:A_BomoEE_comp64093_c0_seq1
144bp
 ribosomal_protein_S23_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
354 O_BomoEE10319_5prime_partial:A_BomoEE_comp64096_c0_seq2
127bp
355 O_BomoEE1031_internal:A_BomoEE_comp22871_c0_seq1
121bp
356 O_BomoEE10320_complete:A_BomoEE_comp64097_c0_seq1
246bp
 PREDICTED:_ER_membrane_protein_complex_subunit_3_[Papilio_machaon]
GO:0005794 C Golgi apparatus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030140 C trans-Golgi network transport vesicle
GO:0034975 P protein folding in endoplasmic reticulum
GO:0045494 P photoreceptor cell maintenance
GO:0060041 P retina development in camera-type eye
GO:0072546 C EMC complex
357 O_BomoEE10321_complete:A_BomoEE_comp64103_c0_seq1
166bp
 mariner_transposase_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
358 O_BomoEE10322_complete:A_BomoEE_comp64103_c0_seq1
100bp
359 O_BomoEE10323_complete:A_BomoEE_comp64106_c0_seq1
472bp
 PREDICTED:_protein_LSM14_homolog_B_isoform_X3_[Bombyx_mori]
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0030529 C ribonucleoprotein complex
360 O_BomoEE10324_complete:A_BomoEE_comp64106_c0_seq1
239bp
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