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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2101 O_BomoEE11892_complete:A_BomoEE_comp65493_c0_seq2
105bp
2102 O_BomoEE11893_complete:A_BomoEE_comp65497_c0_seq1
280bp
 PREDICTED:_armadillo_repeat-containing_protein_6_homolog,_partial_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2103 O_BomoEE11894_complete:A_BomoEE_comp65497_c0_seq1
183bp
 PREDICTED:_armadillo_repeat-containing_protein_6_homolog_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2104 O_BomoEE11895_complete:A_BomoEE_comp65497_c0_seq1
120bp
2105 O_BomoEE11896_5prime_partial:A_BomoEE_comp65497_c0_seq1
118bp
2106 O_BomoEE11897_complete:A_BomoEE_comp65497_c0_seq2
467bp
 PREDICTED:_armadillo_repeat-containing_protein_6_homolog_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2107 O_BomoEE11898_complete:A_BomoEE_comp65497_c0_seq2
120bp
2108 O_BomoEE11899_5prime_partial:A_BomoEE_comp65497_c0_seq2
118bp
2109 O_BomoEE1189_5prime_partial:A_BomoEE_comp26476_c0_seq1
103bp
2110 O_BomoEE118_5prime_partial:A_BomoEE_comp2084_c0_seq2
215bp
 PREDICTED:_thioredoxin_domain-containing_protein_3_homolog_[Bombyx_mori]
GO:0004550 F nucleoside diphosphate kinase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006165 P nucleoside diphosphate phosphorylation
GO:0006183 P GTP biosynthetic process
GO:0006228 P UTP biosynthetic process
GO:0006241 P CTP biosynthetic process
GO:0045454 P cell redox homeostasis
2111 O_BomoEE11900_complete:A_BomoEE_comp65498_c0_seq1
234bp
 putative_cuticle_protein_CPR151_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008010 F structural constituent of chitin-based larval cuticle
GO:0008061 F chitin binding
GO:0008150 P biological_process
GO:0030023 F extracellular matrix constituent conferring elasticity
GO:0031012 C extracellular matrix
GO:0032992 C protein-carbohydrate complex
GO:0040003 P chitin-based cuticle development
GO:0042302 F structural constituent of cuticle
2112 O_BomoEE11901_complete:A_BomoEE_comp65498_c0_seq2
128bp
 putative_cuticle_protein_CPR151_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0008010 F structural constituent of chitin-based larval cuticle
GO:0008061 F chitin binding
GO:0008150 P biological_process
GO:0030023 F extracellular matrix constituent conferring elasticity
GO:0031012 C extracellular matrix
GO:0032992 C protein-carbohydrate complex
GO:0040003 P chitin-based cuticle development
GO:0042302 F structural constituent of cuticle
2113 O_BomoEE11902_complete:A_BomoEE_comp65504_c0_seq1
346bp
 PREDICTED:_speckle_targeted_PIP5K1A-regulated_poly(A)_polymerase_isoform_X3_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016180 P snRNA processing
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0050265 F RNA uridylyltransferase activity
GO:0071044 P histone mRNA catabolic process
GO:0098789 P pre-mRNA cleavage required for polyadenylation
2114 O_BomoEE11903_complete:A_BomoEE_comp65504_c0_seq2
397bp
 U6_snRNA-specific_terminal_uridylyltransferase_1_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0002134 F UTP binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0030145 F manganese ion binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0071044 P histone mRNA catabolic process
2115 O_BomoEE11904_complete:A_BomoEE_comp65505_c0_seq1
507bp
 PREDICTED:_tRNA-splicing_ligase_RtcB_homolog_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003972 F RNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0008452 F RNA ligase activity
GO:0016874 F ligase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0072669 C tRNA-splicing ligase complex
GO:2000237 P positive regulation of tRNA processing
2116 O_BomoEE11905_complete:A_BomoEE_comp65506_c0_seq1
189bp
 PREDICTED:_gamma-glutamylcyclotransferase-like_[Papilio_machaon]
GO:0001836 P release of cytochrome c from mitochondria
GO:0003839 F gamma-glutamylcyclotransferase activity
GO:0005829 C cytosol
GO:0006750 P glutathione biosynthetic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0042803 F protein homodimerization activity
GO:0070062 C extracellular exosome
2117 O_BomoEE11906_complete:A_BomoEE_comp65508_c0_seq1
569bp
 PREDICTED:_autophagy-related_protein_16-1_isoform_X1_[Papilio_machaon]
GO:0000045 P autophagosome assembly
GO:0000421 C autophagosome membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0005930 C axoneme
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0034045 C phagophore assembly site membrane
GO:0039689 P negative stranded viral RNA replication
GO:0042802 F identical protein binding
2118 O_BomoEE11907_complete:A_BomoEE_comp65508_c0_seq2
569bp
 PREDICTED:_autophagy-related_protein_16-1_isoform_X1_[Papilio_machaon]
GO:0000045 P autophagosome assembly
GO:0000421 C autophagosome membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0005930 C axoneme
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0034045 C phagophore assembly site membrane
GO:0039689 P negative stranded viral RNA replication
GO:0042802 F identical protein binding
2119 O_BomoEE11908_complete:A_BomoEE_comp65508_c0_seq4
551bp
 PREDICTED:_autophagy-related_protein_16-1_isoform_X2_[Papilio_machaon]
GO:0000045 P autophagosome assembly
GO:0000421 C autophagosome membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0005930 C axoneme
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0034045 C phagophore assembly site membrane
GO:0039689 P negative stranded viral RNA replication
GO:0042802 F identical protein binding
2120 O_BomoEE11909_complete:A_BomoEE_comp65508_c0_seq5
551bp
 PREDICTED:_autophagy-related_protein_16-1_isoform_X2_[Papilio_machaon]
GO:0000045 P autophagosome assembly
GO:0000421 C autophagosome membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0005930 C axoneme
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016236 P macroautophagy
GO:0034045 C phagophore assembly site membrane
GO:0039689 P negative stranded viral RNA replication
GO:0042802 F identical protein binding
2121 O_BomoEE1190_complete:A_BomoEE_comp26487_c0_seq1
338bp
 PREDICTED:_uncharacterized_protein_LOC106721700_[Papilio_machaon]
GO:0000209 P protein polyubiquitination
GO:0005575 C cellular_component
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
2122 O_BomoEE11910_complete:A_BomoEE_comp65509_c0_seq1
856bp
 putative_ribosomal_RNA_methyltransferase_[Danaus_plexippus]
GO:0000453 P enzyme-directed rRNA 2'-O-methylation
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0001510 P RNA methylation
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0008649 F rRNA methyltransferase activity
GO:0008650 F rRNA (uridine-2'-O-)-methyltransferase activity
GO:0016435 F rRNA (guanine) methyltransferase activity
GO:0016740 F transferase activity
GO:0030687 C preribosome, large subunit precursor
GO:0030688 C preribosome, small subunit precursor
GO:0031167 P rRNA methylation
GO:0032259 P methylation
GO:0042254 P ribosome biogenesis
2123 O_BomoEE11911_complete:A_BomoEE_comp65509_c0_seq1
110bp
2124 O_BomoEE11912_complete:A_BomoEE_comp65512_c0_seq1
701bp
 PREDICTED:_protein_MCM10_homolog_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003682 F chromatin binding
GO:0003688 F DNA replication origin binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005656 C nuclear pre-replicative complex
GO:0006260 P DNA replication
GO:0006267 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 P DNA replication initiation
GO:0016321 P female meiosis chromosome segregation
GO:0030261 P chromosome condensation
GO:0031298 C replication fork protection complex
GO:0035214 P eye-antennal disc development
GO:0042023 P DNA endoreduplication
GO:0045678 P positive regulation of R7 cell differentiation
GO:0045931 P positive regulation of mitotic cell cycle
GO:0046872 F metal ion binding
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:1901693 P negative regulation of compound eye retinal cell apoptotic process
2125 O_BomoEE11913_complete:A_BomoEE_comp65516_c0_seq1
695bp
 PREDICTED:_ATP-binding_cassette_sub-family_B_member_8,_mitochondrial_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0002481 P antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
GO:0002485 P antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent
GO:0002489 P antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent
GO:0002591 P positive regulation of antigen processing and presentation of peptide antigen via MHC class I
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
2126 O_BomoEE11914_complete:A_BomoEE_comp65517_c0_seq1
254bp
 hypothetical_protein_KGM_19145_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0010629 P negative regulation of gene expression
GO:0016246 P RNA interference
GO:0035925 F mRNA 3'-UTR AU-rich region binding
GO:0046872 F metal ion binding
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
2127 O_BomoEE11915_complete:A_BomoEE_comp65517_c0_seq2
270bp
 hypothetical_protein_KGM_19145_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0010629 P negative regulation of gene expression
GO:0016246 P RNA interference
GO:0035925 F mRNA 3'-UTR AU-rich region binding
GO:0046872 F metal ion binding
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
2128 O_BomoEE11916_complete:A_BomoEE_comp65521_c0_seq1
499bp
 PREDICTED:_coiled-coil_domain-containing_protein_22_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2129 O_BomoEE11917_complete:A_BomoEE_comp65521_c0_seq1
360bp
 28S_ribosomal_protein_S27,_mitochondrial,_partial_[Operophtera_brumata]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0030529 C ribonucleoprotein complex
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
2130 O_BomoEE11918_complete:A_BomoEE_comp65526_c0_seq1
398bp
 PREDICTED:_zinc_finger_protein_431-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030154 P cell differentiation
GO:0042826 F histone deacetylase binding
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0045668 P negative regulation of osteoblast differentiation
GO:0046872 F metal ion binding
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