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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1711 O_BomoEE11540_5prime_partial:A_BomoEE_comp65162_c1_seq3
3567bp
 PREDICTED:_uncharacterized_protein_LOC101742281_[Bombyx_mori]
1712 O_BomoEE11541_complete:A_BomoEE_comp65162_c1_seq3
127bp
1713 O_BomoEE11542_5prime_partial:A_BomoEE_comp65162_c1_seq4
4107bp
 PREDICTED:_uncharacterized_protein_LOC101742281_[Bombyx_mori]
1714 O_BomoEE11543_complete:A_BomoEE_comp65162_c1_seq4
127bp
1715 O_BomoEE11544_complete:A_BomoEE_comp65162_c1_seq4
103bp
1716 O_BomoEE11545_complete:A_BomoEE_comp65164_c0_seq1
1134bp
 PREDICTED:_ATP-dependent_RNA_helicase_DHX36_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001503 P ossification
GO:0002151 F G-quadruplex RNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009615 P response to virus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0032206 P positive regulation of telomere maintenance
GO:0032481 P positive regulation of type I interferon production
GO:0042826 F histone deacetylase binding
GO:0043330 P response to exogenous dsRNA
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051880 F G-quadruplex DNA binding
GO:0070062 C extracellular exosome
1717 O_BomoEE11546_complete:A_BomoEE_comp65164_c0_seq1
162bp
1718 O_BomoEE11547_complete:A_BomoEE_comp65164_c0_seq2
1117bp
 PREDICTED:_ATP-dependent_RNA_helicase_DHX36_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001503 P ossification
GO:0002151 F G-quadruplex RNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009615 P response to virus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0032206 P positive regulation of telomere maintenance
GO:0032481 P positive regulation of type I interferon production
GO:0042826 F histone deacetylase binding
GO:0043330 P response to exogenous dsRNA
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051880 F G-quadruplex DNA binding
GO:0070062 C extracellular exosome
1719 O_BomoEE11548_complete:A_BomoEE_comp65164_c0_seq2
162bp
1720 O_BomoEE11549_complete:A_BomoEE_comp65167_c1_seq1
625bp
 PREDICTED:_uncharacterized_protein_KIAA2013_homolog_[Papilio_xuthus]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1721 O_BomoEE1154_internal:A_BomoEE_comp25710_c0_seq1
149bp
 PREDICTED:_circadian_clock-controlled_protein-like_[Amyelois_transitella]
1722 O_BomoEE11550_complete:A_BomoEE_comp65167_c1_seq1
109bp
1723 O_BomoEE11551_complete:A_BomoEE_comp65167_c1_seq2
625bp
 PREDICTED:_uncharacterized_protein_KIAA2013_homolog_[Papilio_xuthus]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1724 O_BomoEE11552_complete:A_BomoEE_comp65167_c1_seq2
109bp
1725 O_BomoEE11553_complete:A_BomoEE_comp65170_c0_seq1
154bp
 PREDICTED:_rho_GTPase-activating_protein_26_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005925 C focal adhesion
GO:0007165 P signal transduction
GO:0007399 P nervous system development
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
1726 O_BomoEE11554_3prime_partial:A_BomoEE_comp65170_c0_seq1
119bp
1727 O_BomoEE11555_5prime_partial:A_BomoEE_comp65170_c0_seq2
244bp
 PREDICTED:_rho_GTPase-activating_protein_26_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007010 P cytoskeleton organization
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0043066 P negative regulation of apoptotic process
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
GO:0051056 P regulation of small GTPase mediated signal transduction
1728 O_BomoEE11556_3prime_partial:A_BomoEE_comp65170_c0_seq2
119bp
1729 O_BomoEE11557_complete:A_BomoEE_comp65171_c0_seq1
641bp
 71_kDa_protein_[Bombyx_mori]
1730 O_BomoEE11558_complete:A_BomoEE_comp65171_c0_seq1
107bp
1731 O_BomoEE11559_complete:A_BomoEE_comp65176_c0_seq1
484bp
 PREDICTED:_methyltransferase-like_protein_16_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0052907 F 23S rRNA (adenine(1618)-N(6))-methyltransferase activity
GO:0070475 P rRNA base methylation
1732 O_BomoEE1155_5prime_partial:A_BomoEE_comp25732_c0_seq1
114bp
putative_resolvase/recombinase_protein_[Geobacillus_virus_E3]
1733 O_BomoEE11560_complete:A_BomoEE_comp65177_c0_seq1
571bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_RFWD2-like_[Plutella_xylostella]
GO:0000139 C Golgi membrane
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
1734 O_BomoEE11561_complete:A_BomoEE_comp65177_c0_seq1
130bp
1735 O_BomoEE11562_5prime_partial:A_BomoEE_comp65177_c0_seq1
117bp
1736 O_BomoEE11563_complete:A_BomoEE_comp65177_c0_seq2
597bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_RFWD2-like_[Plutella_xylostella]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
1737 O_BomoEE11564_complete:A_BomoEE_comp65177_c0_seq2
130bp
1738 O_BomoEE11565_complete:A_BomoEE_comp65177_c0_seq2
118bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_RFWD2-like_[Plutella_xylostella]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
1739 O_BomoEE11566_5prime_partial:A_BomoEE_comp65177_c0_seq2
117bp
1740 O_BomoEE11567_complete:A_BomoEE_comp65177_c0_seq3
717bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_RFWD2-like_[Plutella_xylostella]
GO:0000139 C Golgi membrane
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
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