SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/95730
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1681 O_BomoEE11513_complete:A_BomoEE_comp65145_c0_seq5
900bp
 PREDICTED:_DNA_repair_endonuclease_XPF_[Amyelois_transitella]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000724 P double-strand break repair via homologous recombination
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006298 P mismatch repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007131 P reciprocal meiotic recombination
GO:0007143 P female meiotic nuclear division
GO:0016321 P female meiosis chromosome segregation
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
GO:0045132 P meiotic chromosome segregation
GO:0046982 F protein heterodimerization activity
GO:0051321 P meiotic cell cycle
GO:1901255 P nucleotide-excision repair involved in interstrand cross-link repair
1682 O_BomoEE11514_complete:A_BomoEE_comp65145_c0_seq5
250bp
 L-isoaspartyl_protein_carboxyl_methyltransferase_[Bombyx_mori]
GO:0004719 F protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
1683 O_BomoEE11515_complete:A_BomoEE_comp65145_c0_seq5
156bp
1684 O_BomoEE11516_complete:A_BomoEE_comp65145_c0_seq6
250bp
 L-isoaspartyl_protein_carboxyl_methyltransferase_[Bombyx_mori]
GO:0004719 F protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
GO:0005737 C cytoplasm
GO:0006464 P cellular protein modification process
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
1685 O_BomoEE11517_complete:A_BomoEE_comp65145_c0_seq6
244bp
 hypothetical_protein_KGM_15729_[Danaus_plexippus]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000724 P double-strand break repair via homologous recombination
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006298 P mismatch repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007131 P reciprocal meiotic recombination
GO:0007143 P female meiotic nuclear division
GO:0016321 P female meiosis chromosome segregation
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
GO:0045132 P meiotic chromosome segregation
GO:0046982 F protein heterodimerization activity
GO:0051321 P meiotic cell cycle
GO:1901255 P nucleotide-excision repair involved in interstrand cross-link repair
1686 O_BomoEE11518_3prime_partial:A_BomoEE_comp65149_c0_seq1
249bp
 PREDICTED:_tudor_and_KH_domain-containing_protein_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007140 P male meiotic nuclear division
GO:0007283 P spermatogenesis
GO:0009566 P fertilization
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0043046 P DNA methylation involved in gamete generation
GO:0071546 C pi-body
GO:0071547 C piP-body
1687 O_BomoEE11519_5prime_partial:A_BomoEE_comp65149_c0_seq1
147bp
1688 O_BomoEE1151_internal:A_BomoEE_comp25624_c0_seq1
121bp
 PREDICTED:_uncharacterized_protein_LOC101746716_isoform_X2_[Bombyx_mori]
1689 O_BomoEE11520_3prime_partial:A_BomoEE_comp65149_c0_seq2
235bp
 PREDICTED:_tudor_and_KH_domain-containing_protein_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007140 P male meiotic nuclear division
GO:0007283 P spermatogenesis
GO:0009566 P fertilization
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0043046 P DNA methylation involved in gamete generation
GO:0071546 C pi-body
GO:0071547 C piP-body
1690 O_BomoEE11521_5prime_partial:A_BomoEE_comp65149_c0_seq2
134bp
1691 O_BomoEE11522_complete:A_BomoEE_comp65149_c0_seq3
200bp
 PREDICTED:_tudor_and_KH_domain-containing_protein_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007140 P male meiotic nuclear division
GO:0007283 P spermatogenesis
GO:0009566 P fertilization
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0043046 P DNA methylation involved in gamete generation
GO:0071546 C pi-body
GO:0071547 C piP-body
1692 O_BomoEE11523_complete:A_BomoEE_comp65150_c0_seq1
110bp
 hypothetical_protein_RR46_09637_[Papilio_xuthus]
GO:0005739 C mitochondrion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
1693 O_BomoEE11524_complete:A_BomoEE_comp65150_c0_seq2
110bp
 hypothetical_protein_RR46_09637_[Papilio_xuthus]
GO:0005739 C mitochondrion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031966 C mitochondrial membrane
1694 O_BomoEE11525_5prime_partial:A_BomoEE_comp65154_c1_seq1
403bp
 PREDICTED:_protein_AF-9-like_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0008023 C transcription elongation factor complex
GO:0009952 P anterior/posterior pattern specification
GO:0070062 C extracellular exosome
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000096 P positive regulation of Wnt signaling pathway, planar cell polarity pathway
1695 O_BomoEE11526_complete:A_BomoEE_comp65154_c3_seq1
355bp
 hypothetical_protein_KGM_00180_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006469 P negative regulation of protein kinase activity
GO:0008023 C transcription elongation factor complex
1696 O_BomoEE11527_complete:A_BomoEE_comp65154_c3_seq2
355bp
 hypothetical_protein_KGM_00180_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006469 P negative regulation of protein kinase activity
GO:0008023 C transcription elongation factor complex
1697 O_BomoEE11528_complete:A_BomoEE_comp65156_c0_seq1
590bp
 PREDICTED:_T-cell_immunomodulatory_protein_[Amyelois_transitella]
GO:0005576 C extracellular region
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070062 C extracellular exosome
1698 O_BomoEE11529_complete:A_BomoEE_comp65156_c0_seq2
171bp
 T-cell_immunomodulatory_protein_[Operophtera_brumata]
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070062 C extracellular exosome
1699 O_BomoEE1152_internal:A_BomoEE_comp25666_c1_seq1
126bp
 p270_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004312 F fatty acid synthase activity
GO:0004313 F [acyl-carrier-protein] S-acetyltransferase activity
GO:0004314 F [acyl-carrier-protein] S-malonyltransferase activity
GO:0004315 F 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0004316 F 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0004317 F 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity
GO:0004319 F enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity
GO:0004320 F oleoyl-[acyl-carrier-protein] hydrolase activity
GO:0005623 C obsolete cell
GO:0006089 P lactate metabolic process
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0016295 F myristoyl-[acyl-carrier-protein] hydrolase activity
GO:0016296 F palmitoyl-[acyl-carrier-protein] hydrolase activity
GO:0016297 F acyl-[acyl-carrier-protein] hydrolase activity
GO:0016491 F oxidoreductase activity
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0016829 F lyase activity
GO:0019171 F 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
GO:0031177 F phosphopantetheine binding
GO:0032100 P positive regulation of appetite
GO:0047117 F enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity
GO:0047451 F 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GO:0055114 P obsolete oxidation-reduction process
1700 O_BomoEE11530_complete:A_BomoEE_comp65158_c0_seq1
403bp
 PREDICTED:_coiled-coil_domain-containing_protein_6_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0008150 P biological_process
GO:0017124 F SH3 domain binding
1701 O_BomoEE11531_complete:A_BomoEE_comp65158_c0_seq1
146bp
1702 O_BomoEE11532_complete:A_BomoEE_comp65158_c0_seq1
145bp
1703 O_BomoEE11533_complete:A_BomoEE_comp65158_c0_seq2
228bp
 PREDICTED:_coiled-coil_domain-containing_protein_6_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0008150 P biological_process
GO:0017124 F SH3 domain binding
1704 O_BomoEE11534_complete:A_BomoEE_comp65158_c0_seq2
146bp
1705 O_BomoEE11535_5prime_partial:A_BomoEE_comp65162_c1_seq1
3534bp
 PREDICTED:_uncharacterized_protein_LOC101742281_[Bombyx_mori]
1706 O_BomoEE11536_complete:A_BomoEE_comp65162_c1_seq1
127bp
1707 O_BomoEE11537_5prime_partial:A_BomoEE_comp65162_c1_seq2
4140bp
 PREDICTED:_uncharacterized_protein_LOC101742281_[Bombyx_mori]
1708 O_BomoEE11538_complete:A_BomoEE_comp65162_c1_seq2
127bp
1709 O_BomoEE11539_complete:A_BomoEE_comp65162_c1_seq2
103bp
1710 O_BomoEE1153_5prime_partial:A_BomoEE_comp25703_c0_seq1
113bp
 PREDICTED:_uncharacterized_protein_LOC105842288_[Bombyx_mori]
previous next from show/95730

- SilkBase 1999-2023 -