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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
14491 O_BomoEE23042_complete:A_BomoEE_comp70570_c0_seq1
109bp
14492 O_BomoEE23043_complete:A_BomoEE_comp70570_c0_seq2
1959bp
 PREDICTED:_nipped-B-like_protein_A_[Bombyx_mori]
GO:0000795 C synaptonemal complex
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0008278 C cohesin complex
GO:0010468 P regulation of gene expression
GO:0010628 P positive regulation of gene expression
GO:0032116 C SMC loading complex
GO:0034088 P maintenance of mitotic sister chromatid cohesion
GO:0035327 C euchromatin
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0070193 P synaptonemal complex organization
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
14493 O_BomoEE23044_complete:A_BomoEE_comp70570_c0_seq2
165bp
14494 O_BomoEE23045_complete:A_BomoEE_comp70570_c0_seq2
161bp
14495 O_BomoEE23046_complete:A_BomoEE_comp70570_c0_seq2
112bp
14496 O_BomoEE23047_complete:A_BomoEE_comp70570_c0_seq2
111bp
14497 O_BomoEE23048_complete:A_BomoEE_comp70570_c0_seq2
109bp
14498 O_BomoEE23049_complete:A_BomoEE_comp70571_c0_seq1
140bp
14499 O_BomoEE2304_complete:A_BomoEE_comp33862_c0_seq1
161bp
14500 O_BomoEE23050_complete:A_BomoEE_comp70571_c0_seq1
102bp
 PREDICTED:_uncharacterized_protein_LOC105841989_[Bombyx_mori]
14501 O_BomoEE23051_complete:A_BomoEE_comp70571_c0_seq2
117bp
 PREDICTED:_uncharacterized_protein_LOC105841989_[Bombyx_mori]
14502 O_BomoEE23052_complete:A_BomoEE_comp70571_c0_seq2
102bp
 PREDICTED:_uncharacterized_protein_LOC105841989_[Bombyx_mori]
14503 O_BomoEE23053_complete:A_BomoEE_comp70571_c0_seq3
140bp
14504 O_BomoEE23054_complete:A_BomoEE_comp70571_c0_seq3
102bp
 PREDICTED:_uncharacterized_protein_LOC105841989_[Bombyx_mori]
14505 O_BomoEE23055_complete:A_BomoEE_comp70572_c0_seq1
428bp
 PREDICTED:_PH_domain-containing_protein_DDB_G0287875-like_isoform_X1_[Bombyx_mori]
14506 O_BomoEE23056_complete:A_BomoEE_comp70578_c0_seq1
146bp
 PREDICTED:_28S_ribosomal_protein_S29,_mitochondrial-like,_partial_[Plutella_xylostella]
GO:0003735 F structural constituent of ribosome
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006915 P apoptotic process
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
14507 O_BomoEE23057_complete:A_BomoEE_comp70578_c0_seq2
231bp
 PREDICTED:_28S_ribosomal_protein_S29,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006915 P apoptotic process
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
GO:0097190 P apoptotic signaling pathway
14508 O_BomoEE23058_complete:A_BomoEE_comp70578_c0_seq4
108bp
 PREDICTED:_28S_ribosomal_protein_S29,_mitochondrial-like,_partial_[Plutella_xylostella]
GO:0003735 F structural constituent of ribosome
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006915 P apoptotic process
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
14509 O_BomoEE23059_complete:A_BomoEE_comp70578_c0_seq6
236bp
 PREDICTED:_28S_ribosomal_protein_S29,_mitochondrial_[Plutella_xylostella]
GO:0003735 F structural constituent of ribosome
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006915 P apoptotic process
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
14510 O_BomoEE2305_complete:A_BomoEE_comp33862_c0_seq1
145bp
14511 O_BomoEE23060_complete:A_BomoEE_comp70578_c0_seq7
372bp
 PREDICTED:_28S_ribosomal_protein_S29,_mitochondrial_[Plutella_xylostella]
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006915 P apoptotic process
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
GO:0097190 P apoptotic signaling pathway
14512 O_BomoEE23061_complete:A_BomoEE_comp70578_c0_seq9
231bp
 PREDICTED:_28S_ribosomal_protein_S29,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006915 P apoptotic process
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
GO:0097190 P apoptotic signaling pathway
14513 O_BomoEE23062_complete:A_BomoEE_comp70579_c1_seq1
438bp
 PREDICTED:_uncharacterized_protein_LOC101737920_[Bombyx_mori]
GO:0000272 P polysaccharide catabolic process
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005576 C extracellular region
GO:0005975 P carbohydrate metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0030248 F cellulose binding
GO:0031176 F endo-1,4-beta-xylanase activity
GO:0045493 P xylan catabolic process
14514 O_BomoEE23063_complete:A_BomoEE_comp70579_c1_seq1
177bp
14515 O_BomoEE23064_complete:A_BomoEE_comp70579_c1_seq1
121bp
14516 O_BomoEE23065_complete:A_BomoEE_comp70579_c1_seq2
385bp
 PREDICTED:_uncharacterized_protein_LOC101737920_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007507 P heart development
14517 O_BomoEE23066_5prime_partial:A_BomoEE_comp70579_c1_seq3
113bp
 PREDICTED:_uncharacterized_protein_LOC101737920_[Bombyx_mori]
14518 O_BomoEE23067_5prime_partial:A_BomoEE_comp70579_c1_seq5
494bp
 PREDICTED:_uncharacterized_protein_LOC101737920_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007507 P heart development
14519 O_BomoEE23068_complete:A_BomoEE_comp70579_c1_seq7
385bp
 PREDICTED:_uncharacterized_protein_LOC101737920_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007507 P heart development
14520 O_BomoEE23069_complete:A_BomoEE_comp70579_c1_seq9
831bp
 PREDICTED:_uncharacterized_protein_LOC101737920_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007507 P heart development
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