SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/95730
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
14431 O_BomoEE2298_complete:A_BomoEE_comp33847_c0_seq2
111bp
14432 O_BomoEE22990_complete:A_BomoEE_comp70561_c1_seq1
489bp
 PREDICTED:_zinc_finger_protein_883-like_[Amyelois_transitella]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
14433 O_BomoEE22991_complete:A_BomoEE_comp70561_c1_seq2
461bp
 PREDICTED:_oocyte_zinc_finger_protein_XlCOF6-like_isoform_X1_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
14434 O_BomoEE22992_complete:A_BomoEE_comp70561_c1_seq2
202bp
14435 O_BomoEE22993_complete:A_BomoEE_comp70561_c1_seq4
469bp
 PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1-like_[Plutella_xylostella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030154 P cell differentiation
GO:0042826 F histone deacetylase binding
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0045668 P negative regulation of osteoblast differentiation
GO:0046872 F metal ion binding
14436 O_BomoEE22994_complete:A_BomoEE_comp70561_c1_seq5
423bp
 PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1-like_[Plutella_xylostella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030154 P cell differentiation
GO:0042826 F histone deacetylase binding
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0045668 P negative regulation of osteoblast differentiation
GO:0046872 F metal ion binding
14437 O_BomoEE22995_5prime_partial:A_BomoEE_comp70561_c1_seq6
263bp
14438 O_BomoEE22996_3prime_partial:A_BomoEE_comp70561_c1_seq6
160bp
 PREDICTED:_E3_ubiquitin-protein_ligase_UBR3_[Amyelois_transitella]
GO:0000151 C ubiquitin ligase complex
GO:0001701 P in utero embryonic development
GO:0001967 P suckling behavior
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007608 P sensory perception of smell
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042048 P olfactory behavior
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
14439 O_BomoEE22997_complete:A_BomoEE_comp70561_c1_seq6
128bp
14440 O_BomoEE22998_5prime_partial:A_BomoEE_comp70561_c1_seq6
108bp
14441 O_BomoEE22999_3prime_partial:A_BomoEE_comp70561_c1_seq8
687bp
 PREDICTED:_oocyte_zinc_finger_protein_XlCOF6-like_isoform_X1_[Amyelois_transitella]
GO:0000976 F transcription cis-regulatory region binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0042254 P ribosome biogenesis
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0071294 P cellular response to zinc ion
14442 O_BomoEE2299_complete:A_BomoEE_comp33848_c0_seq1
813bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX23_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000354 P cis assembly of pre-catalytic spliceosome
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
14443 O_BomoEE229_internal:A_BomoEE_comp3475_c0_seq1
195bp
 PREDICTED:_uncharacterized_protein_LOC101735325_[Bombyx_mori]
14444 O_BomoEE22_5prime_partial:A_BomoEE_comp333_c0_seq2
132bp
14445 O_BomoEE23000_5prime_partial:A_BomoEE_comp70561_c1_seq8
502bp
 hypothetical_protein_N301_14950,_partial_[Charadrius_vociferus]
14446 O_BomoEE23001_complete:A_BomoEE_comp70561_c1_seq8
128bp
14447 O_BomoEE23002_complete:A_BomoEE_comp70561_c1_seq9
535bp
 PREDICTED:_zinc_finger_protein_883-like_[Amyelois_transitella]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
14448 O_BomoEE23003_3prime_partial:A_BomoEE_comp70563_c0_seq1
143bp
 PREDICTED:_serine_racemase-like_[Bombyx_mori]
GO:0003941 F L-serine ammonia-lyase activity
GO:0004794 F L-threonine ammonia-lyase activity
GO:0005737 C cytoplasm
GO:0006520 P cellular amino acid metabolic process
GO:0006565 P L-serine catabolic process
GO:0006567 P threonine catabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009097 P isoleucine biosynthetic process
GO:0016597 F amino acid binding
GO:0016829 F lyase activity
GO:0030170 F pyridoxal phosphate binding
14449 O_BomoEE23004_5prime_partial:A_BomoEE_comp70563_c0_seq1
138bp
 Protein_AAR2_-like_protein_[Trichinella_papuae]
14450 O_BomoEE23005_complete:A_BomoEE_comp70563_c0_seq2
265bp
 PREDICTED:_serine_racemase-like_[Bombyx_mori]
GO:0003941 F L-serine ammonia-lyase activity
GO:0004794 F L-threonine ammonia-lyase activity
GO:0005737 C cytoplasm
GO:0006520 P cellular amino acid metabolic process
GO:0006565 P L-serine catabolic process
GO:0006567 P threonine catabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009097 P isoleucine biosynthetic process
GO:0016597 F amino acid binding
GO:0016829 F lyase activity
GO:0030170 F pyridoxal phosphate binding
14451 O_BomoEE23006_5prime_partial:A_BomoEE_comp70563_c0_seq3
136bp
 PREDICTED:_serine_racemase-like_[Bombyx_mori]
GO:0003941 F L-serine ammonia-lyase activity
GO:0004794 F L-threonine ammonia-lyase activity
GO:0005737 C cytoplasm
GO:0006520 P cellular amino acid metabolic process
GO:0006565 P L-serine catabolic process
GO:0006567 P threonine catabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009097 P isoleucine biosynthetic process
GO:0016597 F amino acid binding
GO:0016829 F lyase activity
GO:0030170 F pyridoxal phosphate binding
14452 O_BomoEE23007_complete:A_BomoEE_comp70563_c0_seq4
208bp
 PREDICTED:_serine_racemase-like_[Bombyx_mori]
GO:0003941 F L-serine ammonia-lyase activity
GO:0004794 F L-threonine ammonia-lyase activity
GO:0005737 C cytoplasm
GO:0006520 P cellular amino acid metabolic process
GO:0006565 P L-serine catabolic process
GO:0006567 P threonine catabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009097 P isoleucine biosynthetic process
GO:0016597 F amino acid binding
GO:0016829 F lyase activity
GO:0030170 F pyridoxal phosphate binding
14453 O_BomoEE23008_3prime_partial:A_BomoEE_comp70563_c0_seq5
200bp
 PREDICTED:_serine_racemase-like_[Bombyx_mori]
GO:0003941 F L-serine ammonia-lyase activity
GO:0004794 F L-threonine ammonia-lyase activity
GO:0005737 C cytoplasm
GO:0006520 P cellular amino acid metabolic process
GO:0006565 P L-serine catabolic process
GO:0006567 P threonine catabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009097 P isoleucine biosynthetic process
GO:0016597 F amino acid binding
GO:0016829 F lyase activity
GO:0030170 F pyridoxal phosphate binding
14454 O_BomoEE23009_5prime_partial:A_BomoEE_comp70563_c0_seq5
138bp
 Protein_AAR2_-like_protein_[Trichinella_papuae]
14455 O_BomoEE2300_complete:A_BomoEE_comp33848_c0_seq1
217bp
 uncharacterized_protein_BN745_02520_[Klebsiella_variicola_CAG:634]
14456 O_BomoEE23010_5prime_partial:A_BomoEE_comp70563_c0_seq6
107bp
 PREDICTED:_serine_racemase-like_[Bombyx_mori]
GO:0003941 F L-serine ammonia-lyase activity
GO:0004794 F L-threonine ammonia-lyase activity
GO:0005737 C cytoplasm
GO:0006520 P cellular amino acid metabolic process
GO:0006565 P L-serine catabolic process
GO:0006567 P threonine catabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009097 P isoleucine biosynthetic process
GO:0016597 F amino acid binding
GO:0016829 F lyase activity
GO:0030170 F pyridoxal phosphate binding
14457 O_BomoEE23011_complete:A_BomoEE_comp70563_c0_seq7
236bp
 PREDICTED:_serine_racemase-like_[Bombyx_mori]
GO:0003941 F L-serine ammonia-lyase activity
GO:0004794 F L-threonine ammonia-lyase activity
GO:0005737 C cytoplasm
GO:0006520 P cellular amino acid metabolic process
GO:0006565 P L-serine catabolic process
GO:0006567 P threonine catabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009097 P isoleucine biosynthetic process
GO:0016597 F amino acid binding
GO:0016829 F lyase activity
GO:0030170 F pyridoxal phosphate binding
14458 O_BomoEE23012_complete:A_BomoEE_comp70563_c0_seq8
179bp
 PREDICTED:_serine_racemase-like_[Bombyx_mori]
GO:0003941 F L-serine ammonia-lyase activity
GO:0004794 F L-threonine ammonia-lyase activity
GO:0005737 C cytoplasm
GO:0006520 P cellular amino acid metabolic process
GO:0006565 P L-serine catabolic process
GO:0006567 P threonine catabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009097 P isoleucine biosynthetic process
GO:0016597 F amino acid binding
GO:0016829 F lyase activity
GO:0030170 F pyridoxal phosphate binding
14459 O_BomoEE23013_complete:A_BomoEE_comp70565_c1_seq1
651bp
 PREDICTED:_CLIP-associating_protein_[Papilio_xuthus]
GO:0000022 P mitotic spindle elongation
GO:0000070 P mitotic sister chromatid segregation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000922 C spindle pole
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005827 C polar microtubule
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005876 C spindle microtubule
GO:0007049 P cell cycle
GO:0007051 P spindle organization
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007275 P multicellular organism development
GO:0007282 P cystoblast division
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0019827 P stem cell population maintenance
GO:0030154 P cell differentiation
GO:0030426 C growth cone
GO:0030723 P ovarian fusome organization
GO:0031116 P positive regulation of microtubule polymerization
GO:0032154 C cleavage furrow
GO:0035099 P hemocyte migration
GO:0035371 C microtubule plus-end
GO:0040001 P establishment of mitotic spindle localization
GO:0042995 C cell projection
GO:0045169 C fusome
GO:0045172 C germline ring canal
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046602 P regulation of mitotic centrosome separation
GO:0048477 P oogenesis
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051315 P attachment of mitotic spindle microtubules to kinetochore
GO:0090307 P mitotic spindle assembly
14460 O_BomoEE23014_complete:A_BomoEE_comp70565_c1_seq1
379bp
previous next from show/95730

- SilkBase 1999-2023 -