SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/95730
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
13801 O_BomoEE22421_complete:A_BomoEE_comp70406_c0_seq1
1068bp
 PREDICTED:_RNA_exonuclease_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
13802 O_BomoEE22422_3prime_partial:A_BomoEE_comp70406_c1_seq1
174bp
 PREDICTED:_ras-related_protein_Rab-23-like_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005776 C autophagosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006968 P cellular defense response
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042384 P cilium assembly
GO:0042992 P obsolete negative regulation of transcription factor import into nucleus
GO:0045335 C phagocytic vesicle
GO:0070062 C extracellular exosome
GO:0097094 P craniofacial suture morphogenesis
13803 O_BomoEE22423_5prime_partial:A_BomoEE_comp70406_c1_seq1
101bp
13804 O_BomoEE22424_complete:A_BomoEE_comp70406_c1_seq5
134bp
 PREDICTED:_ras-related_protein_Rab-23-like_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005776 C autophagosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006968 P cellular defense response
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042384 P cilium assembly
GO:0042992 P obsolete negative regulation of transcription factor import into nucleus
GO:0045335 C phagocytic vesicle
GO:0070062 C extracellular exosome
GO:0097094 P craniofacial suture morphogenesis
13805 O_BomoEE22425_complete:A_BomoEE_comp70406_c1_seq7
126bp
 PREDICTED:_ras-related_protein_Rab-23-like_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005776 C autophagosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006968 P cellular defense response
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042384 P cilium assembly
GO:0042992 P obsolete negative regulation of transcription factor import into nucleus
GO:0045335 C phagocytic vesicle
GO:0070062 C extracellular exosome
GO:0097094 P craniofacial suture morphogenesis
13806 O_BomoEE22426_3prime_partial:A_BomoEE_comp70406_c1_seq8
114bp
 PREDICTED:_ras-related_protein_Rab-23-like_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005776 C autophagosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0006968 P cellular defense response
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042384 P cilium assembly
GO:0042992 P obsolete negative regulation of transcription factor import into nucleus
GO:0045335 C phagocytic vesicle
GO:0070062 C extracellular exosome
GO:0097094 P craniofacial suture morphogenesis
13807 O_BomoEE22427_5prime_partial:A_BomoEE_comp70406_c1_seq8
101bp
13808 O_BomoEE22428_complete:A_BomoEE_comp70409_c0_seq2
595bp
 PREDICTED:_ras-specific_guanine_nucleotide-releasing_factor_RalGPS2_isoform_X1_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007264 P small GTPase mediated signal transduction
GO:0016020 C membrane
GO:0032485 P regulation of Ral protein signal transduction
GO:0043547 P positive regulation of GTPase activity
13809 O_BomoEE22429_complete:A_BomoEE_comp70409_c0_seq3
577bp
 PREDICTED:_ras-specific_guanine_nucleotide-releasing_factor_RalGPS2_isoform_X1_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007264 P small GTPase mediated signal transduction
GO:0008321 F guanyl-nucleotide exchange factor activity
GO:0016020 C membrane
GO:0032485 P regulation of Ral protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0043547 P positive regulation of GTPase activity
13810 O_BomoEE2242_complete:A_BomoEE_comp33736_c0_seq1
321bp
 RGS-GAIP_interacting_protein_GIPC_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005903 C brush border
GO:0005938 C cell cortex
GO:0006605 P protein targeting
GO:0007268 P chemical synaptic transmission
GO:0008021 C synaptic vesicle
GO:0012506 C vesicle membrane
GO:0014047 P glutamate secretion
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0017022 F myosin binding
GO:0030139 C endocytic vesicle
GO:0030165 F PDZ domain binding
GO:0030511 P positive regulation of transforming growth factor beta receptor signaling pathway
GO:0031647 P regulation of protein stability
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032467 P positive regulation of cytokinesis
GO:0042803 F protein homodimerization activity
GO:0043197 C dendritic spine
GO:0043198 C dendritic shaft
GO:0043542 P endothelial cell migration
GO:0048167 P regulation of synaptic plasticity
GO:0070062 C extracellular exosome
13811 O_BomoEE22430_3prime_partial:A_BomoEE_comp70410_c0_seq1
710bp
 PREDICTED:_tau-tubulin_kinase_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006468 P protein phosphorylation
GO:0007224 P smoothened signaling pathway
GO:0008360 P regulation of cell shape
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030030 P cell projection organization
GO:0035869 C ciliary transition zone
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
13812 O_BomoEE22431_complete:A_BomoEE_comp70410_c0_seq1
336bp
13813 O_BomoEE22432_complete:A_BomoEE_comp70410_c0_seq1
100bp
13814 O_BomoEE22433_3prime_partial:A_BomoEE_comp70410_c0_seq2
710bp
 PREDICTED:_tau-tubulin_kinase_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006468 P protein phosphorylation
GO:0007224 P smoothened signaling pathway
GO:0008360 P regulation of cell shape
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030030 P cell projection organization
GO:0035869 C ciliary transition zone
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
13815 O_BomoEE22434_complete:A_BomoEE_comp70410_c0_seq2
336bp
13816 O_BomoEE22435_complete:A_BomoEE_comp70410_c0_seq2
100bp
13817 O_BomoEE22436_3prime_partial:A_BomoEE_comp70410_c0_seq3
710bp
 PREDICTED:_tau-tubulin_kinase_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006468 P protein phosphorylation
GO:0007224 P smoothened signaling pathway
GO:0008360 P regulation of cell shape
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030030 P cell projection organization
GO:0035869 C ciliary transition zone
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
13818 O_BomoEE22437_complete:A_BomoEE_comp70410_c0_seq3
336bp
13819 O_BomoEE22438_complete:A_BomoEE_comp70410_c0_seq3
100bp
13820 O_BomoEE22439_3prime_partial:A_BomoEE_comp70410_c0_seq4
710bp
 PREDICTED:_tau-tubulin_kinase_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006468 P protein phosphorylation
GO:0007224 P smoothened signaling pathway
GO:0008360 P regulation of cell shape
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030030 P cell projection organization
GO:0035869 C ciliary transition zone
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
13821 O_BomoEE2243_complete:A_BomoEE_comp33741_c0_seq1
250bp
 DNA_polymerase_accessory_subunit_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0071897 P DNA biosynthetic process
13822 O_BomoEE22440_complete:A_BomoEE_comp70410_c0_seq4
336bp
13823 O_BomoEE22441_complete:A_BomoEE_comp70410_c0_seq4
100bp
13824 O_BomoEE22442_3prime_partial:A_BomoEE_comp70410_c0_seq5
589bp
 PREDICTED:_tau-tubulin_kinase_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005814 C centriole
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006468 P protein phosphorylation
GO:0007224 P smoothened signaling pathway
GO:0008360 P regulation of cell shape
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030030 P cell projection organization
GO:0035869 C ciliary transition zone
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
13825 O_BomoEE22443_complete:A_BomoEE_comp70410_c0_seq5
336bp
13826 O_BomoEE22444_complete:A_BomoEE_comp70410_c0_seq5
100bp
13827 O_BomoEE22445_complete:A_BomoEE_comp70411_c0_seq1
416bp
 PREDICTED:_uncharacterized_protein_LOC106129698_[Amyelois_transitella]
13828 O_BomoEE22446_complete:A_BomoEE_comp70411_c0_seq1
160bp
 PREDICTED:_uncharacterized_protein_LOC101736656_[Bombyx_mori]
13829 O_BomoEE22447_complete:A_BomoEE_comp70411_c0_seq1
125bp
13830 O_BomoEE22448_3prime_partial:A_BomoEE_comp70411_c0_seq2
479bp
 PREDICTED:_uncharacterized_protein_LOC106129698_[Amyelois_transitella]
previous next from show/95730

- SilkBase 1999-2023 -