SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/95730
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12871 O_BomoEE21585_complete:A_BomoEE_comp70213_c0_seq5
120bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
12872 O_BomoEE21586_complete:A_BomoEE_comp70213_c0_seq6
1066bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
12873 O_BomoEE21587_complete:A_BomoEE_comp70213_c0_seq6
471bp
 PREDICTED:_nucleoredoxin-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0016055 P Wnt signaling pathway
GO:0016491 F oxidoreductase activity
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031397 P negative regulation of protein ubiquitination
GO:0047134 F protein-disulfide reductase (NAD(P)) activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072358 P circulatory system development
12874 O_BomoEE21588_complete:A_BomoEE_comp70213_c0_seq6
133bp
12875 O_BomoEE21589_complete:A_BomoEE_comp70213_c0_seq7
375bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
12876 O_BomoEE2158_complete:A_BomoEE_comp33540_c0_seq1
266bp
 PREDICTED:_synaptosomal-associated_protein_29_[Papilio_polytes]
GO:0000139 C Golgi membrane
GO:0000421 C autophagosome membrane
GO:0005484 F SNAP receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006914 P autophagy
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016082 P synaptic vesicle priming
GO:0019905 F syntaxin binding
GO:0020018 C ciliary pocket membrane
GO:0030030 P cell projection organization
GO:0031201 C SNARE complex
GO:0031410 C cytoplasmic vesicle
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0043195 C terminal bouton
GO:0060170 C ciliary membrane
GO:0097352 P autophagosome maturation
12877 O_BomoEE21590_complete:A_BomoEE_comp70213_c0_seq7
120bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
12878 O_BomoEE21591_complete:A_BomoEE_comp70213_c0_seq8
471bp
 PREDICTED:_nucleoredoxin-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0016055 P Wnt signaling pathway
GO:0016491 F oxidoreductase activity
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031397 P negative regulation of protein ubiquitination
GO:0047134 F protein-disulfide reductase (NAD(P)) activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072358 P circulatory system development
12879 O_BomoEE21592_complete:A_BomoEE_comp70213_c0_seq8
385bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
12880 O_BomoEE21593_complete:A_BomoEE_comp70213_c0_seq8
375bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
12881 O_BomoEE21594_complete:A_BomoEE_comp70213_c0_seq8
133bp
12882 O_BomoEE21595_complete:A_BomoEE_comp70213_c0_seq8
120bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
12883 O_BomoEE21596_complete:A_BomoEE_comp70213_c0_seq9
818bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
12884 O_BomoEE21597_complete:A_BomoEE_comp70213_c0_seq9
471bp
 PREDICTED:_nucleoredoxin-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0016055 P Wnt signaling pathway
GO:0016491 F oxidoreductase activity
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031397 P negative regulation of protein ubiquitination
GO:0047134 F protein-disulfide reductase (NAD(P)) activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072358 P circulatory system development
12885 O_BomoEE21598_complete:A_BomoEE_comp70213_c0_seq9
133bp
12886 O_BomoEE21599_complete:A_BomoEE_comp70213_c0_seq9
120bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
12887 O_BomoEE2159_complete:A_BomoEE_comp33540_c0_seq1
144bp
12888 O_BomoEE215_internal:A_BomoEE_comp3223_c1_seq1
153bp
 PREDICTED:_hemicentin-1-like_isoform_X2_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005938 C cell cortex
GO:0007601 P visual perception
GO:0030054 C cell junction
GO:0031012 C extracellular matrix
GO:0050896 P response to stimulus
GO:0070062 C extracellular exosome
12889 O_BomoEE21600_complete:A_BomoEE_comp70213_c0_seq10
623bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
12890 O_BomoEE21601_complete:A_BomoEE_comp70213_c0_seq10
471bp
 PREDICTED:_nucleoredoxin-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0016055 P Wnt signaling pathway
GO:0016491 F oxidoreductase activity
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031397 P negative regulation of protein ubiquitination
GO:0047134 F protein-disulfide reductase (NAD(P)) activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072358 P circulatory system development
12891 O_BomoEE21602_complete:A_BomoEE_comp70213_c0_seq10
385bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
12892 O_BomoEE21603_complete:A_BomoEE_comp70213_c0_seq10
133bp
12893 O_BomoEE21604_complete:A_BomoEE_comp70213_c0_seq11
1041bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
12894 O_BomoEE21605_complete:A_BomoEE_comp70213_c0_seq11
471bp
 PREDICTED:_nucleoredoxin-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0016055 P Wnt signaling pathway
GO:0016491 F oxidoreductase activity
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031397 P negative regulation of protein ubiquitination
GO:0047134 F protein-disulfide reductase (NAD(P)) activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072358 P circulatory system development
12895 O_BomoEE21606_complete:A_BomoEE_comp70213_c0_seq11
133bp
12896 O_BomoEE21607_complete:A_BomoEE_comp70213_c0_seq12
786bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
12897 O_BomoEE21608_complete:A_BomoEE_comp70213_c0_seq12
471bp
 PREDICTED:_nucleoredoxin-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0016055 P Wnt signaling pathway
GO:0016491 F oxidoreductase activity
GO:0030154 P cell differentiation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031397 P negative regulation of protein ubiquitination
GO:0047134 F protein-disulfide reductase (NAD(P)) activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072358 P circulatory system development
12898 O_BomoEE21609_complete:A_BomoEE_comp70213_c0_seq12
133bp
12899 O_BomoEE2160_complete:A_BomoEE_comp33540_c0_seq1
112bp
12900 O_BomoEE21610_complete:A_BomoEE_comp70213_c0_seq12
120bp
 PREDICTED:_probable_E3_ubiquitin-protein_ligase_HERC4_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
previous next from show/95730

- SilkBase 1999-2023 -