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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12781 O_BomoEE21503_complete:A_BomoEE_comp70209_c0_seq1
666bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_CG8611_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
12782 O_BomoEE21504_5prime_partial:A_BomoEE_comp70209_c0_seq1
118bp
12783 O_BomoEE21505_complete:A_BomoEE_comp70209_c0_seq2
300bp
 PREDICTED:_DEAD-box_ATP-dependent_RNA_helicase_17-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005794 C Golgi apparatus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
12784 O_BomoEE21506_complete:A_BomoEE_comp70209_c0_seq3
666bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_CG8611_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
12785 O_BomoEE21507_complete:A_BomoEE_comp70209_c0_seq3
298bp
 PREDICTED:_DEAD-box_ATP-dependent_RNA_helicase_17-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005794 C Golgi apparatus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
12786 O_BomoEE21508_5prime_partial:A_BomoEE_comp70209_c0_seq3
118bp
12787 O_BomoEE21509_complete:A_BomoEE_comp70209_c0_seq4
942bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_CG8611_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
12788 O_BomoEE2150_complete:A_BomoEE_comp33537_c0_seq1
377bp
 nucleosome_assembly_protein_isoform_2_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006334 P nucleosome assembly
GO:0008150 P biological_process
GO:0044822 F RNA binding
12789 O_BomoEE21510_5prime_partial:A_BomoEE_comp70209_c0_seq4
118bp
12790 O_BomoEE21511_complete:A_BomoEE_comp70209_c0_seq5
633bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_CG8611_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
12791 O_BomoEE21512_complete:A_BomoEE_comp70209_c0_seq5
298bp
 PREDICTED:_DEAD-box_ATP-dependent_RNA_helicase_17-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005794 C Golgi apparatus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
12792 O_BomoEE21513_5prime_partial:A_BomoEE_comp70209_c0_seq5
118bp
12793 O_BomoEE21514_complete:A_BomoEE_comp70209_c0_seq5
101bp
12794 O_BomoEE21515_5prime_partial:A_BomoEE_comp70210_c0_seq1
359bp
 PREDICTED:_uncharacterized_protein_LOC101743340_[Bombyx_mori]
12795 O_BomoEE21516_complete:A_BomoEE_comp70210_c0_seq2
266bp
 PREDICTED:_uncharacterized_protein_LOC101743340_[Bombyx_mori]
12796 O_BomoEE21517_complete:A_BomoEE_comp70210_c0_seq4
117bp
 seminal_fluid_protein_62_[Bombyx_mori]
12797 O_BomoEE21518_5prime_partial:A_BomoEE_comp70210_c0_seq7
366bp
 PREDICTED:_uncharacterized_protein_LOC101743340_[Bombyx_mori]
12798 O_BomoEE21519_complete:A_BomoEE_comp70210_c0_seq8
273bp
 PREDICTED:_uncharacterized_protein_LOC101743340_[Bombyx_mori]
12799 O_BomoEE2151_3prime_partial:A_BomoEE_comp33537_c0_seq1
145bp
12800 O_BomoEE21520_complete:A_BomoEE_comp70211_c0_seq1
204bp
 PREDICTED:_cullin-2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0030163 P protein catabolic process
GO:0030891 C VCB complex
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
12801 O_BomoEE21521_complete:A_BomoEE_comp70211_c0_seq1
110bp
12802 O_BomoEE21522_3prime_partial:A_BomoEE_comp70211_c0_seq1
108bp
12803 O_BomoEE21523_complete:A_BomoEE_comp70211_c0_seq2
334bp
 Cullin-2_[Papilio_machaon]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0030163 P protein catabolic process
GO:0030891 C VCB complex
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
12804 O_BomoEE21524_complete:A_BomoEE_comp70211_c0_seq2
153bp
12805 O_BomoEE21525_5prime_partial:A_BomoEE_comp70211_c0_seq3
142bp
12806 O_BomoEE21526_3prime_partial:A_BomoEE_comp70211_c0_seq3
128bp
 PREDICTED:_cullin-2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0030163 P protein catabolic process
GO:0030891 C VCB complex
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
12807 O_BomoEE21527_complete:A_BomoEE_comp70211_c0_seq4
168bp
 PREDICTED:_cullin-2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0030163 P protein catabolic process
GO:0030891 C VCB complex
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
12808 O_BomoEE21528_5prime_partial:A_BomoEE_comp70211_c0_seq4
142bp
12809 O_BomoEE21529_3prime_partial:A_BomoEE_comp70211_c0_seq4
128bp
 PREDICTED:_cullin-2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0016567 P protein ubiquitination
GO:0030163 P protein catabolic process
GO:0030891 C VCB complex
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
12810 O_BomoEE2152_complete:A_BomoEE_comp33537_c0_seq1
105bp
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