SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/95730
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10501 O_BomoEE19452_5prime_partial:A_BomoEE_comp69754_c0_seq6
202bp
 Uncharacterised_protein_[Bordetella_pertussis]
10502 O_BomoEE19453_5prime_partial:A_BomoEE_comp69754_c0_seq6
125bp
10503 O_BomoEE19454_complete:A_BomoEE_comp69754_c0_seq7
177bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_trifunctional_purine_biosynthetic_protein_adenosine-3_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004637 F phosphoribosylamine-glycine ligase activity
GO:0004641 F phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004644 F phosphoribosylglycinamide formyltransferase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006164 P purine nucleotide biosynthetic process
GO:0006189 P 'de novo' IMP biosynthetic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0009113 P purine nucleobase biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
10504 O_BomoEE19455_internal:A_BomoEE_comp69754_c0_seq8
124bp
 PREDICTED:_trifunctional_purine_biosynthetic_protein_adenosine-3_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004637 F phosphoribosylamine-glycine ligase activity
GO:0004641 F phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004644 F phosphoribosylglycinamide formyltransferase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006164 P purine nucleotide biosynthetic process
GO:0006189 P 'de novo' IMP biosynthetic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0009113 P purine nucleobase biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
10505 O_BomoEE19456_5prime_partial:A_BomoEE_comp69754_c0_seq9
760bp
 PREDICTED:_trifunctional_purine_biosynthetic_protein_adenosine-3_isoform_X1_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004637 F phosphoribosylamine-glycine ligase activity
GO:0004641 F phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004644 F phosphoribosylglycinamide formyltransferase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0006189 P 'de novo' IMP biosynthetic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0009113 P purine nucleobase biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
10506 O_BomoEE19457_complete:A_BomoEE_comp69754_c0_seq9
342bp
 Uncharacterised_protein_[Bordetella_pertussis]
10507 O_BomoEE19458_complete:A_BomoEE_comp69754_c0_seq9
212bp
 Uncharacterised_protein_[Bordetella_pertussis]
10508 O_BomoEE19459_5prime_partial:A_BomoEE_comp69754_c0_seq9
144bp
10509 O_BomoEE1945_5prime_partial:A_BomoEE_comp33172_c0_seq1
272bp
 PREDICTED:_nuclear_pore_complex_protein_Nup160-like_[Papilio_xuthus]
GO:0000776 C kinetochore
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0031080 C nuclear pore outer ring
GO:0051028 P mRNA transport
10510 O_BomoEE19460_5prime_partial:A_BomoEE_comp69754_c0_seq9
112bp
10511 O_BomoEE19461_5prime_partial:A_BomoEE_comp69754_c0_seq10
839bp
 PREDICTED:_trifunctional_purine_biosynthetic_protein_adenosine-3_isoform_X1_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004637 F phosphoribosylamine-glycine ligase activity
GO:0004641 F phosphoribosylformylglycinamidine cyclo-ligase activity
GO:0004644 F phosphoribosylglycinamide formyltransferase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006164 P purine nucleotide biosynthetic process
GO:0006189 P 'de novo' IMP biosynthetic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0009113 P purine nucleobase biosynthetic process
GO:0016740 F transferase activity
GO:0016742 F hydroxymethyl-, formyl- and related transferase activity
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
10512 O_BomoEE19462_complete:A_BomoEE_comp69754_c0_seq10
342bp
 Uncharacterised_protein_[Bordetella_pertussis]
10513 O_BomoEE19463_complete:A_BomoEE_comp69754_c0_seq10
212bp
 Uncharacterised_protein_[Bordetella_pertussis]
10514 O_BomoEE19464_5prime_partial:A_BomoEE_comp69754_c0_seq10
144bp
10515 O_BomoEE19465_5prime_partial:A_BomoEE_comp69754_c0_seq10
112bp
10516 O_BomoEE19466_3prime_partial:A_BomoEE_comp69757_c0_seq1
251bp
 PREDICTED:_RNA-binding_protein_Musashi_homolog_Rbp6_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
10517 O_BomoEE19467_complete:A_BomoEE_comp69757_c0_seq1
146bp
10518 O_BomoEE19468_3prime_partial:A_BomoEE_comp69757_c0_seq2
171bp
 PREDICTED:_RNA-binding_protein_Musashi_homolog_Rbp6_isoform_X1_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
10519 O_BomoEE19469_5prime_partial:A_BomoEE_comp69757_c0_seq5
188bp
 hypothetical_protein_RR48_12695_[Papilio_machaon]
10520 O_BomoEE1946_5prime_partial:A_BomoEE_comp33172_c0_seq1
120bp
10521 O_BomoEE19470_complete:A_BomoEE_comp69757_c0_seq5
185bp
10522 O_BomoEE19471_3prime_partial:A_BomoEE_comp69757_c0_seq6
171bp
 PREDICTED:_RNA-binding_protein_Musashi_homolog_Rbp6_isoform_X1_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
10523 O_BomoEE19472_complete:A_BomoEE_comp69757_c0_seq7
146bp
10524 O_BomoEE19473_complete:A_BomoEE_comp69757_c0_seq9
193bp
10525 O_BomoEE19474_internal:A_BomoEE_comp69757_c0_seq10
105bp
10526 O_BomoEE19475_complete:A_BomoEE_comp69759_c0_seq1
546bp
 alpha-esterase_40_precursor_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
10527 O_BomoEE19476_complete:A_BomoEE_comp69759_c0_seq2
467bp
 alpha-esterase_40_precursor_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
10528 O_BomoEE19477_complete:A_BomoEE_comp69760_c0_seq1
835bp
 PREDICTED:_acyl-CoA_synthetase_family_member_4_homolog_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016874 F ligase activity
GO:0016878 F acid-thiol ligase activity
10529 O_BomoEE19478_complete:A_BomoEE_comp69760_c0_seq1
209bp
10530 O_BomoEE19479_complete:A_BomoEE_comp69760_c0_seq2
477bp
 putative_AMP_dependent_ligase_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003824 F catalytic activity
GO:0004043 F L-aminoadipate-semialdehyde dehydrogenase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016874 F ligase activity
GO:0016878 F acid-thiol ligase activity
GO:0019482 P beta-alanine metabolic process
GO:0043041 P amino acid activation for nonribosomal peptide biosynthetic process
GO:0055114 P obsolete oxidation-reduction process
previous next from show/95730

- SilkBase 1999-2023 -