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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4441 O_BomaMSG13999_complete:A_BomaMSG_c23249_g1_i2
119bp
4442 O_BomaMSG1399_internal:A_BomaMSG_c5974_g1_i1
114bp
putative_tumor_necrosis_factor-alpha-converting_enzyme_tace/adam17_[Operophtera_brumata]
4443 O_BomaMSG139_internal:A_BomaMSG_c638_g1_i1
99bp
4444 O_BomaMSG13_internal:A_BomaMSG_c175_g1_i1
226bp
xylosyltransferase_oxt_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0008375 F acetylglucosaminyltransferase activity
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030158 F protein xylosyltransferase activity
GO:0030201 P heparan sulfate proteoglycan metabolic process
GO:0030204 P chondroitin sulfate metabolic process
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0042732 P D-xylose metabolic process
GO:0050650 P chondroitin sulfate proteoglycan biosynthetic process
4445 O_BomaMSG14000_complete:A_BomaMSG_c23249_g1_i3
434bp
T-complex_protein_11-like_protein_1_[Bombyx_mori]
GO:0005874 C microtubule
4446 O_BomaMSG14001_complete:A_BomaMSG_c23249_g1_i3
128bp
4447 O_BomaMSG14002_complete:A_BomaMSG_c23249_g1_i3
103bp
4448 O_BomaMSG14003_internal:A_BomaMSG_c23250_g1_i2
395bp
uncharacterized_protein_LOC110384711_isoform_X3_[Bombyx_mori]
4449 O_BomaMSG14004_5prime_partial:A_BomaMSG_c23251_g1_i1
166bp
coiled-coil_domain-containing_protein_43_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4450 O_BomaMSG14005_5prime_partial:A_BomaMSG_c23251_g1_i2
199bp
coiled-coil_domain-containing_protein_43_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4451 O_BomaMSG14006_5prime_partial:A_BomaMSG_c23251_g1_i3
134bp
coiled-coil_domain-containing_protein_43_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4452 O_BomaMSG14007_3prime_partial:A_BomaMSG_c23252_g1_i1
370bp
uncharacterized_protein_LOC101742371_[Bombyx_mori]
4453 O_BomaMSG14008_internal:A_BomaMSG_c23252_g1_i2
257bp
uncharacterized_protein_LOC101742371_[Bombyx_mori]
GO:0000390 P spliceosomal complex disassembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0031981 C nuclear lumen
GO:0042752 P regulation of circadian rhythm
GO:0071008 C U2-type post-mRNA release spliceosomal complex
GO:1990446 F U1 snRNP binding
4454 O_BomaMSG14009_internal:A_BomaMSG_c23252_g1_i3
278bp
uncharacterized_protein_LOC101742371_[Bombyx_mori]
GO:0000390 P spliceosomal complex disassembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0031981 C nuclear lumen
GO:0042752 P regulation of circadian rhythm
GO:0071008 C U2-type post-mRNA release spliceosomal complex
GO:1990446 F U1 snRNP binding
4455 O_BomaMSG1400_5prime_partial:A_BomaMSG_c5974_g1_i1
114bp
4456 O_BomaMSG14010_5prime_partial:A_BomaMSG_c23254_g1_i1
134bp
UPF0668_protein_C10orf76_homolog_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4457 O_BomaMSG14011_complete:A_BomaMSG_c23254_g1_i2
679bp
UPF0668_protein_C10orf76_homolog_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4458 O_BomaMSG14012_5prime_partial:A_BomaMSG_c23254_g1_i3
119bp
UPF0668_protein_C10orf76_homolog_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4459 O_BomaMSG14013_5prime_partial:A_BomaMSG_c23255_g1_i1
129bp
UDP-galactose_4-epimerase_isoform_X1_[Bombyx_mori]
4460 O_BomaMSG14014_5prime_partial:A_BomaMSG_c23255_g1_i2
373bp
UDP-galactose_4-epimerase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003978 F UDP-glucose 4-epimerase activity
GO:0005975 P carbohydrate metabolic process
GO:0006012 P galactose metabolic process
GO:0009243 P O antigen biosynthetic process
GO:0016853 F isomerase activity
GO:0050662 F obsolete coenzyme binding
4461 O_BomaMSG14015_3prime_partial:A_BomaMSG_c23256_g1_i1
125bp
nostrin_isoform_X2_[Bombyx_mori]
GO:0008017 F microtubule binding
GO:0016050 P vesicle organization
GO:0030041 P actin filament polymerization
GO:0031982 C vesicle
GO:0043327 P chemotaxis to cAMP
GO:0048471 C perinuclear region of cytoplasm
4462 O_BomaMSG14016_5prime_partial:A_BomaMSG_c23257_g1_i1
188bp
mediator_of_RNA_polymerase_II_transcription_subunit_18_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
4463 O_BomaMSG14017_complete:A_BomaMSG_c23257_g1_i2
224bp
mediator_of_RNA_polymerase_II_transcription_subunit_18_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
4464 O_BomaMSG14018_5prime_partial:A_BomaMSG_c23258_g1_i2
598bp
gamma-tubulin_complex_component_4_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0000922 C spindle pole
GO:0000923 C equatorial microtubule organizing center
GO:0000930 C gamma-tubulin complex
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005816 C spindle pole body
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006461 P protein-containing complex assembly
GO:0007020 P microtubule nucleation
GO:0007126 P meiotic cell cycle
GO:0008274 C gamma-tubulin large complex
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0031122 P cytoplasmic microtubule organization
GO:0043015 F gamma-tubulin binding
GO:0044732 C mitotic spindle pole body
GO:0051011 F microtubule minus-end binding
GO:0051298 P centrosome duplication
GO:0051415 P microtubule nucleation by interphase microtubule organizing center
GO:0055037 C recycling endosome
GO:0090063 P positive regulation of microtubule nucleation
GO:0090307 P mitotic spindle assembly
4465 O_BomaMSG14019_5prime_partial:A_BomaMSG_c23259_g1_i1
128bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
4466 O_BomaMSG1401_internal:A_BomaMSG_c5976_g1_i1
278bp
uncharacterized_protein_LOC101736416_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0008017 F microtubule binding
GO:0016020 C membrane
GO:0034453 P microtubule anchoring
4467 O_BomaMSG14020_5prime_partial:A_BomaMSG_c23259_g1_i3
128bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
4468 O_BomaMSG14021_complete:A_BomaMSG_c23261_g1_i2
246bp
rab-like_protein_3_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
4469 O_BomaMSG14022_internal:A_BomaMSG_c23263_g1_i1
599bp
uncharacterized_protein_LOC101737540_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006605 P protein targeting
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017038 P protein import
GO:0046872 F metal ion binding
GO:0065002 P intracellular protein transmembrane transport
4470 O_BomaMSG14023_5prime_partial:A_BomaMSG_c23264_g1_i1
718bp
threonine--tRNA_ligase,_cytoplasmic_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004829 F threonine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006435 P threonyl-tRNA aminoacylation
GO:0015629 C actin cytoskeleton
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070062 C extracellular exosome
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