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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4411 O_BomaMSG13971_complete:A_BomaMSG_c23239_g1_i1
433bp
protein_pellino_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006952 P defense response
GO:0006955 P immune response
GO:0007165 P signal transduction
GO:0008063 P Toll signaling pathway
GO:0008348 P negative regulation of antimicrobial humoral response
GO:0019207 F kinase regulator activity
GO:0042325 P regulation of phosphorylation
GO:0045751 P negative regulation of Toll signaling pathway
GO:1902524 P positive regulation of protein K48-linked ubiquitination
4412 O_BomaMSG13972_complete:A_BomaMSG_c23239_g1_i1
139bp
4413 O_BomaMSG13973_5prime_partial:A_BomaMSG_c23239_g1_i2
447bp
protein_pellino_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006952 P defense response
GO:0006955 P immune response
GO:0007165 P signal transduction
GO:0008063 P Toll signaling pathway
GO:0008348 P negative regulation of antimicrobial humoral response
GO:0019207 F kinase regulator activity
GO:0042325 P regulation of phosphorylation
GO:0045751 P negative regulation of Toll signaling pathway
GO:1902524 P positive regulation of protein K48-linked ubiquitination
4414 O_BomaMSG13974_5prime_partial:A_BomaMSG_c23239_g1_i2
126bp
4415 O_BomaMSG13975_complete:A_BomaMSG_c23240_g1_i1
400bp
aminoacylase-1_isoform_X1_[Bombyx_mori]
GO:0004046 F aminoacylase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006520 P cellular amino acid metabolic process
GO:0008152 P metabolic process
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
4416 O_BomaMSG13976_5prime_partial:A_BomaMSG_c23241_g1_i1
291bp
LOW_QUALITY_PROTEIN:_mitochondrial-processing_peptidase_subunit_alpha_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004222 F metalloendopeptidase activity
GO:0005615 C extracellular space
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
4417 O_BomaMSG13977_5prime_partial:A_BomaMSG_c23241_g1_i2
543bp
LOW_QUALITY_PROTEIN:_mitochondrial-processing_peptidase_subunit_alpha_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004175 F endopeptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005615 C extracellular space
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
4418 O_BomaMSG13978_complete:A_BomaMSG_c23244_g1_i2
250bp
methyl-CpG-binding_domain_protein_3_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000785 C chromatin
GO:0000790 C chromatin
GO:0000792 C heterochromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001701 P in utero embryonic development
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006346 P DNA methylation-dependent heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007420 P brain development
GO:0007507 P heart development
GO:0007568 P aging
GO:0008327 F methyl-CpG binding
GO:0009888 P tissue development
GO:0014070 P response to organic cyclic compound
GO:0016573 P histone acetylation
GO:0016575 P histone deacetylation
GO:0016581 C NuRD complex
GO:0031492 F nucleosomal DNA binding
GO:0031667 P response to nutrient levels
GO:0032355 P response to estradiol
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0044030 P regulation of DNA methylation
GO:0048568 P embryonic organ development
GO:1901796 P regulation of signal transduction by p53 class mediator
4419 O_BomaMSG13979_complete:A_BomaMSG_c23244_g1_i2
104bp
4420 O_BomaMSG1397_5prime_partial:A_BomaMSG_c5962_g1_i1
161bp
zinc_finger_protein_277_[Bombyx_mori]
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070301 P cellular response to hydrogen peroxide
GO:2000772 P regulation of cellular senescence
4421 O_BomaMSG13980_complete:A_BomaMSG_c23244_g1_i3
175bp
methyl-CpG-binding_domain_protein_3_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000785 C chromatin
GO:0000790 C chromatin
GO:0000792 C heterochromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001701 P in utero embryonic development
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006346 P DNA methylation-dependent heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007420 P brain development
GO:0007507 P heart development
GO:0007568 P aging
GO:0008327 F methyl-CpG binding
GO:0009888 P tissue development
GO:0014070 P response to organic cyclic compound
GO:0016573 P histone acetylation
GO:0016575 P histone deacetylation
GO:0016581 C NuRD complex
GO:0031492 F nucleosomal DNA binding
GO:0031667 P response to nutrient levels
GO:0032355 P response to estradiol
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0044030 P regulation of DNA methylation
GO:0048568 P embryonic organ development
GO:1901796 P regulation of signal transduction by p53 class mediator
4422 O_BomaMSG13981_complete:A_BomaMSG_c23244_g1_i3
109bp
4423 O_BomaMSG13982_complete:A_BomaMSG_c23244_g1_i3
104bp
4424 O_BomaMSG13983_internal:A_BomaMSG_c23245_g1_i1
596bp
4425 O_BomaMSG13984_5prime_partial:A_BomaMSG_c23245_g1_i1
105bp
4426 O_BomaMSG13985_internal:A_BomaMSG_c23246_g1_i1
294bp
gag-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
4427 O_BomaMSG13986_3prime_partial:A_BomaMSG_c23246_g2_i1
169bp
Gag-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
4428 O_BomaMSG13987_internal:A_BomaMSG_c23246_g3_i1
102bp
Gag-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
4429 O_BomaMSG13988_internal:A_BomaMSG_c23246_g3_i2
178bp
gag-like_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
4430 O_BomaMSG13989_3prime_partial:A_BomaMSG_c23247_g1_i1
374bp
rab-like_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
4431 O_BomaMSG1398_internal:A_BomaMSG_c5969_g1_i1
248bp
uncharacterized_protein_LOC101738110_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0033925 F mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity
4432 O_BomaMSG13990_internal:A_BomaMSG_c23247_g1_i2
286bp
rab-like_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
4433 O_BomaMSG13991_internal:A_BomaMSG_c23247_g1_i3
261bp
rab-like_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
4434 O_BomaMSG13992_internal:A_BomaMSG_c23247_g1_i4
306bp
rab-like_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
4435 O_BomaMSG13993_3prime_partial:A_BomaMSG_c23247_g1_i5
356bp
rab-like_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
4436 O_BomaMSG13994_complete:A_BomaMSG_c23248_g1_i2
192bp
AP-3_complex_subunit_sigma-2_isoform_X1_[Bombyx_mori]
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008089 P anterograde axonal transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030123 C AP-3 adaptor complex
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
GO:0048490 P anterograde synaptic vesicle transport
GO:1904115 C axon cytoplasm
4437 O_BomaMSG13995_complete:A_BomaMSG_c23249_g1_i1
498bp
T-complex_protein_11-like_protein_1_[Bombyx_mori]
GO:0005874 C microtubule
4438 O_BomaMSG13996_complete:A_BomaMSG_c23249_g1_i1
128bp
4439 O_BomaMSG13997_complete:A_BomaMSG_c23249_g1_i1
103bp
4440 O_BomaMSG13998_complete:A_BomaMSG_c23249_g1_i2
169bp
T-complex_protein_11-like_protein_1_[Bombyx_mori]
GO:0005874 C microtubule
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