SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/24827
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4171 O_BomaMSG13755_internal:A_BomaMSG_c23150_g1_i2
158bp
BTB/POZ_domain-containing_adapter_for_CUL3-mediated_RhoA_degradation_protein_3_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051260 P protein homooligomerization
4172 O_BomaMSG13756_internal:A_BomaMSG_c23150_g1_i3
222bp
BTB/POZ_domain-containing_adapter_for_CUL3-mediated_RhoA_degradation_protein_3_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051260 P protein homooligomerization
4173 O_BomaMSG13757_3prime_partial:A_BomaMSG_c23150_g1_i4
130bp
BTB/POZ_domain-containing_adapter_for_CUL3-mediated_RhoA_degradation_protein_3_[Helicoverpa_armigera]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051260 P protein homooligomerization
4174 O_BomaMSG13758_internal:A_BomaMSG_c23150_g1_i5
216bp
BTB/POZ_domain-containing_adapter_for_CUL3-mediated_RhoA_degradation_protein_3_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051260 P protein homooligomerization
4175 O_BomaMSG13759_complete:A_BomaMSG_c23152_g1_i1
136bp
peptidyl-prolyl_cis-trans_isomerase_isoform_X1_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003677 F DNA binding
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
4176 O_BomaMSG1375_internal:A_BomaMSG_c5856_g1_i1
206bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006629 P lipid metabolic process
GO:0007283 P spermatogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019915 P lipid storage
GO:0045444 P fat cell differentiation
GO:0051647 P nucleus localization
GO:0060612 P adipose tissue development
4177 O_BomaMSG13760_3prime_partial:A_BomaMSG_c23153_g1_i1
110bp
contactin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005886 C plasma membrane
GO:0005918 C septate junction
GO:0007155 P cell adhesion
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0031225 C anchored component of membrane
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
4178 O_BomaMSG13761_3prime_partial:A_BomaMSG_c23153_g1_i1
104bp
4179 O_BomaMSG13762_internal:A_BomaMSG_c23153_g1_i2
250bp
contactin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005886 C plasma membrane
GO:0005918 C septate junction
GO:0007155 P cell adhesion
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0031225 C anchored component of membrane
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
4180 O_BomaMSG13763_3prime_partial:A_BomaMSG_c23153_g1_i2
104bp
4181 O_BomaMSG13764_internal:A_BomaMSG_c23153_g2_i1
157bp
contactin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005886 C plasma membrane
GO:0005918 C septate junction
GO:0007155 P cell adhesion
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0031225 C anchored component of membrane
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
4182 O_BomaMSG13765_internal:A_BomaMSG_c23154_g1_i1
368bp
splicing_factor_3B_subunit_2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016032 P viral process
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
4183 O_BomaMSG13766_complete:A_BomaMSG_c23154_g1_i1
119bp
4184 O_BomaMSG13767_5prime_partial:A_BomaMSG_c23154_g1_i1
111bp
4185 O_BomaMSG13768_internal:A_BomaMSG_c23154_g1_i2
203bp
PREDICTED:_splicing_factor_3B_subunit_2-like,_partial_[Plutella_xylostella]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016032 P viral process
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
4186 O_BomaMSG13769_complete:A_BomaMSG_c23154_g1_i2
119bp
4187 O_BomaMSG1376_internal:A_BomaMSG_c5856_g1_i1
206bp
4188 O_BomaMSG13770_internal:A_BomaMSG_c23154_g2_i1
319bp
splicing_factor_3B_subunit_2_[Bombyx_mori]
4189 O_BomaMSG13771_5prime_partial:A_BomaMSG_c23154_g2_i1
136bp
4190 O_BomaMSG13772_5prime_partial:A_BomaMSG_c23154_g2_i1
102bp
4191 O_BomaMSG13773_complete:A_BomaMSG_c23155_g1_i2
244bp
high_mobility_group_protein_20A_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0045665 P negative regulation of neuron differentiation
GO:0046982 F protein heterodimerization activity
4192 O_BomaMSG13774_complete:A_BomaMSG_c23155_g1_i2
165bp
high_mobility_group_protein_20A_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
4193 O_BomaMSG13775_complete:A_BomaMSG_c23156_g1_i2
122bp
uncharacterized_protein_LOC101743487_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008057 P eye pigment granule organization
GO:0019898 C extrinsic component of membrane
GO:0030133 C transport vesicle
GO:0031083 C BLOC-1 complex
GO:0046907 P intracellular transport
4194 O_BomaMSG13776_3prime_partial:A_BomaMSG_c23157_g1_i1
248bp
cyclin-J_[Bombyx_mori]
GO:0005634 C nucleus
4195 O_BomaMSG13777_3prime_partial:A_BomaMSG_c23158_g1_i1
136bp
splicing_factor_3A_subunit_1_isoform_X1_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
4196 O_BomaMSG13778_internal:A_BomaMSG_c23158_g2_i1
256bp
splicing_factor_3A_subunit_1_isoform_X2_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
4197 O_BomaMSG13779_5prime_partial:A_BomaMSG_c23158_g2_i1
102bp
4198 O_BomaMSG1377_5prime_partial:A_BomaMSG_c5862_g1_i1
116bp
LOW_QUALITY_PROTEIN:_adenylate_cyclase_type_9_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003091 P renal water homeostasis
GO:0004016 F adenylate cyclase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006171 P cAMP biosynthetic process
GO:0007165 P signal transduction
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0007190 P activation of adenylate cyclase activity
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0019933 P cAMP-mediated signaling
GO:0030424 C axon
GO:0030425 C dendrite
GO:0034199 P activation of protein kinase A activity
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0071377 P cellular response to glucagon stimulus
GO:0071880 P adenylate cyclase-activating adrenergic receptor signaling pathway
4199 O_BomaMSG13780_internal:A_BomaMSG_c23158_g1_i2
111bp
splicing_factor_3A_subunit_1_isoform_X1_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005684 C U2-type spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
4200 O_BomaMSG13781_internal:A_BomaMSG_c23158_g1_i2
111bp
previous next from show/24827

- SilkBase 1999-2023 -