Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
4141	O_BomaMSG13728_complete:A_BomaMSG_c23140_g1_i2 126bp
4142	O_BomaMSG13729_5prime_partial:A_BomaMSG_c23140_g1_i2 115bp		LOW_QUALITY_PROTEIN:_kinesin-like_protein_KIF13A_[Bombyx_mori]	GO:0001726 C ruffle GO:0005737 C cytoplasm GO:0005856 C cytoskeleton GO:0005874 C microtubule GO:0006810 P transport GO:0016020 C membrane GO:0030659 C cytoplasmic vesicle membrane GO:0031410 C cytoplasmic vesicle GO:0042995 C cell projection GO:0046872 F metal ion binding
4143	O_BomaMSG1372_internal:A_BomaMSG_c5814_g1_i1 201bp		survivin-1_[Bombyx_mori]
4144	O_BomaMSG13730_3prime_partial:A_BomaMSG_c23140_g1_i2 105bp		hypothetical_protein_A0H76_2397_[Hepatospora_eriocheir]
4145	O_BomaMSG13731_internal:A_BomaMSG_c23141_g1_i1 458bp		U3_small_nucleolar_RNA-associated_protein_4_homolog_[Bombyx_mori]	GO:0001650 C fibrillar center GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006364 P rRNA processing GO:0030490 P maturation of SSU-rRNA GO:0034455 C t-UTP complex GO:0044822 F RNA binding
4146	O_BomaMSG13732_internal:A_BomaMSG_c23141_g1_i2 326bp		U3_small_nucleolar_RNA-associated_protein_4_homolog_[Bombyx_mori]	GO:0001650 C fibrillar center GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006364 P rRNA processing GO:0030490 P maturation of SSU-rRNA GO:0034455 C t-UTP complex GO:0044822 F RNA binding
4147	O_BomaMSG13733_5prime_partial:A_BomaMSG_c23141_g1_i2 126bp
4148	O_BomaMSG13734_internal:A_BomaMSG_c23141_g1_i3 303bp		U3_small_nucleolar_RNA-associated_protein_4_homolog_[Bombyx_mori]	GO:0001650 C fibrillar center GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006364 P rRNA processing GO:0030490 P maturation of SSU-rRNA GO:0034455 C t-UTP complex GO:0044822 F RNA binding
4149	O_BomaMSG13735_5prime_partial:A_BomaMSG_c23141_g1_i3 126bp
4150	O_BomaMSG13736_internal:A_BomaMSG_c23141_g1_i4 120bp		U3_small_nucleolar_RNA-associated_protein_4_homolog_[Bombyx_mori]
4151	O_BomaMSG13737_5prime_partial:A_BomaMSG_c23141_g1_i4 115bp
4152	O_BomaMSG13738_internal:A_BomaMSG_c23142_g1_i1 276bp		mitochondrial_ribosomal_protein_L2_isoform_X1_[Bombyx_mori]	GO:0002181 P cytoplasmic translation GO:0003723 F RNA binding GO:0003735 F structural constituent of ribosome GO:0005622 C intracellular anatomical structure GO:0005739 C mitochondrion GO:0005743 C mitochondrial inner membrane GO:0005762 C mitochondrial large ribosomal subunit GO:0005840 C ribosome GO:0006412 P translation GO:0015934 C large ribosomal subunit GO:0016740 F transferase activity GO:0030529 C ribonucleoprotein complex GO:0032543 P mitochondrial translation GO:0044822 F RNA binding GO:0070125 P mitochondrial translational elongation GO:0070126 P mitochondrial translational termination
4153	O_BomaMSG13739_5prime_partial:A_BomaMSG_c23144_g1_i1 118bp
4154	O_BomaMSG1373_5prime_partial:A_BomaMSG_c5814_g1_i1 114bp
4155	O_BomaMSG13740_5prime_partial:A_BomaMSG_c23144_g1_i1 114bp		hypothetical_protein_AWB70_01287_[Caballeronia_cordobensis]	GO:0005737 C cytoplasm GO:0005938 C cell cortex GO:0007049 P cell cycle GO:0007275 P multicellular organism development
4156	O_BomaMSG13741_3prime_partial:A_BomaMSG_c23144_g1_i1 111bp			GO:0003146 P heart jogging GO:0003682 F chromatin binding GO:0005634 C nucleus GO:0006412 P translation GO:0007049 P cell cycle GO:0007064 P mitotic sister chromatid cohesion GO:0007417 P central nervous system development GO:0007507 P heart development GO:0009303 P rRNA transcription GO:0010468 P regulation of gene expression GO:0035118 P embryonic pectoral fin morphogenesis GO:0048565 P digestive tract development GO:0048703 P embryonic viscerocranium morphogenesis GO:0060828 P regulation of canonical Wnt signaling pathway GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
4157	O_BomaMSG13742_complete:A_BomaMSG_c23145_g1_i1 352bp		mitochondrial_import_receptor_subunit_TOM70_[Bombyx_mori]	GO:0005515 F protein binding GO:0005739 C mitochondrion GO:0005741 C mitochondrial outer membrane GO:0005742 C mitochondrial outer membrane translocase complex GO:0006626 P protein targeting to mitochondrion GO:0008320 F protein transmembrane transporter activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016236 P macroautophagy GO:0070062 C extracellular exosome GO:0071806 P protein transmembrane transport
4158	O_BomaMSG13743_complete:A_BomaMSG_c23146_g2_i1 517bp		alanine_aminotransferase_1_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0004021 F L-alanine:2-oxoglutarate aminotransferase activity GO:0006103 P 2-oxoglutarate metabolic process GO:0008483 F transaminase activity GO:0009058 P biosynthetic process GO:0016740 F transferase activity GO:0030170 F pyridoxal phosphate binding GO:0042851 P L-alanine metabolic process GO:0042853 P L-alanine catabolic process
4159	O_BomaMSG13744_5prime_partial:A_BomaMSG_c23147_g1_i1 111bp		hikaru_genki_[Bombyx_mori]
4160	O_BomaMSG13745_internal:A_BomaMSG_c23147_g2_i1 144bp		reverse_transcriptase_[Bombyx_mori]	GO:0003964 F RNA-directed DNA polymerase activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0006278 P RNA-dependent DNA biosynthetic process GO:0008152 P metabolic process GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0016787 F hydrolase activity GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4161	O_BomaMSG13746_5prime_partial:A_BomaMSG_c23147_g2_i1 109bp
4162	O_BomaMSG13747_internal:A_BomaMSG_c23147_g2_i2 110bp		reverse_transcriptase_[Bombyx_mori]
4163	O_BomaMSG13748_5prime_partial:A_BomaMSG_c23147_g3_i1 112bp		hikaru_genki_[Bombyx_mori]
4164	O_BomaMSG13749_internal:A_BomaMSG_c23148_g1_i1 850bp		uncharacterized_protein_LOC101744657_[Bombyx_mori]
4165	O_BomaMSG1374_internal:A_BomaMSG_c5815_g1_i1 258bp		negative_elongation_factor_E_[Bombyx_mori]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005694 C chromosome GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006368 P transcription elongation from RNA polymerase II promoter GO:0007070 P obsolete negative regulation of transcription from RNA polymerase II promoter during mitotic cell cycle GO:0008023 C transcription elongation factor complex GO:0017053 C transcription repressor complex GO:0022008 P neurogenesis GO:0032021 C NELF complex GO:0032785 P negative regulation of DNA-templated transcription, elongation GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter GO:0045944 P positive regulation of transcription by RNA polymerase II
4166	O_BomaMSG13750_3prime_partial:A_BomaMSG_c23148_g1_i1 250bp
4167	O_BomaMSG13751_complete:A_BomaMSG_c23148_g1_i1 132bp
4168	O_BomaMSG13752_5prime_partial:A_BomaMSG_c23148_g1_i1 109bp
4169	O_BomaMSG13753_5prime_partial:A_BomaMSG_c23148_g1_i1 100bp
4170	O_BomaMSG13754_3prime_partial:A_BomaMSG_c23150_g1_i1 275bp		BTB/POZ_domain-containing_adapter_for_CUL3-mediated_RhoA_degradation_protein_3_[Bombyx_mori]	GO:0004842 F ubiquitin-protein transferase activity GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0016567 P protein ubiquitination GO:0031463 C Cul3-RING ubiquitin ligase complex GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process GO:0051260 P protein homooligomerization