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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2941 O_BomaMSG12648_5prime_partial:A_BomaMSG_c22650_g1_i1
100bp
2942 O_BomaMSG12649_internal:A_BomaMSG_c22650_g1_i2
455bp
PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2943 O_BomaMSG1264_complete:A_BomaMSG_c5213_g1_i1
349bp
RecName:_Full=V-type_proton_ATPase_subunit_d;_Short=V-ATPase_subunit_d;_AltName:_Full=M40;_AltName:_Full=V-ATPase_40_kDa_subunit;_AltName:_Full=Vacuolar_proton_pump_subunit_d
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015078 F proton transmembrane transporter activity
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0033179 C proton-transporting V-type ATPase, V0 domain
2944 O_BomaMSG12650_5prime_partial:A_BomaMSG_c22650_g1_i2
100bp
2945 O_BomaMSG12651_internal:A_BomaMSG_c22650_g1_i3
402bp
PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X5_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
2946 O_BomaMSG12652_5prime_partial:A_BomaMSG_c22650_g1_i3
100bp
2947 O_BomaMSG12653_5prime_partial:A_BomaMSG_c22651_g1_i2
409bp
nuclear_cap-binding_protein_subunit_1_[Bombyx_mori]
GO:0000339 F RNA cap binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005846 C nuclear cap binding complex
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016070 P RNA metabolic process
GO:0031047 P gene silencing by RNA
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0051028 P mRNA transport
2948 O_BomaMSG12654_complete:A_BomaMSG_c22651_g1_i2
151bp
2949 O_BomaMSG12655_complete:A_BomaMSG_c22651_g1_i2
137bp
2950 O_BomaMSG12656_5prime_partial:A_BomaMSG_c22652_g1_i1
359bp
uncharacterized_protein_LOC105842463_isoform_X2_[Bombyx_mori]
GO:0000138 C Golgi trans cisterna
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0007270 P neuron-neuron synaptic transmission
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008105 P protein localization
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030140 C trans-Golgi network transport vesicle
GO:0030425 C dendrite
GO:0032580 C Golgi cisterna membrane
GO:0040026 P positive regulation of vulval development
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045202 C synapse
GO:0050975 P sensory perception of touch
GO:0097120 P receptor localization to synapse
GO:1902946 P protein localization to early endosome
GO:1903361 P protein localization to basolateral plasma membrane
2951 O_BomaMSG12657_complete:A_BomaMSG_c22652_g1_i1
109bp
LOW_QUALITY_PROTEIN:_hypothetical_protein_M513_01284,_partial_[Trichuris_suis]
2952 O_BomaMSG12658_internal:A_BomaMSG_c22652_g2_i1
163bp
uncharacterized_protein_LOC105842463_isoform_X8_[Bombyx_mori]
GO:0000138 C Golgi trans cisterna
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0007270 P neuron-neuron synaptic transmission
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008105 P protein localization
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030140 C trans-Golgi network transport vesicle
GO:0030425 C dendrite
GO:0032580 C Golgi cisterna membrane
GO:0040026 P positive regulation of vulval development
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045202 C synapse
GO:0050975 P sensory perception of touch
GO:0097120 P receptor localization to synapse
GO:1902946 P protein localization to early endosome
GO:1903361 P protein localization to basolateral plasma membrane
2953 O_BomaMSG12659_internal:A_BomaMSG_c22652_g2_i2
247bp
uncharacterized_protein_LOC105842463_isoform_X8_[Bombyx_mori]
GO:0000138 C Golgi trans cisterna
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0007270 P neuron-neuron synaptic transmission
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008105 P protein localization
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030140 C trans-Golgi network transport vesicle
GO:0030425 C dendrite
GO:0032580 C Golgi cisterna membrane
GO:0040026 P positive regulation of vulval development
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045202 C synapse
GO:0050975 P sensory perception of touch
GO:0097120 P receptor localization to synapse
GO:1902946 P protein localization to early endosome
GO:1903361 P protein localization to basolateral plasma membrane
2954 O_BomaMSG1265_complete:A_BomaMSG_c5213_g1_i1
100bp
2955 O_BomaMSG12660_3prime_partial:A_BomaMSG_c22653_g1_i1
107bp
protein_FMC1_homolog_[Bombyx_mori]
GO:0005739 C mitochondrion
2956 O_BomaMSG12661_5prime_partial:A_BomaMSG_c22653_g1_i3
113bp
SRR1-like_protein_isoform_X1_[Bombyx_mori]
GO:0048511 P rhythmic process
2957 O_BomaMSG12662_3prime_partial:A_BomaMSG_c22653_g1_i3
107bp
protein_FMC1_homolog_[Bombyx_mori]
GO:0005739 C mitochondrion
2958 O_BomaMSG12663_internal:A_BomaMSG_c22654_g1_i1
588bp
E3_ubiquitin-protein_ligase_rnf8-A_isoform_X3_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000781 C chromosome, telomeric region
GO:0003682 F chromatin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007286 P spermatid development
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0033522 P histone H2A ubiquitination
GO:0033523 P histone H2B ubiquitination
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0035861 C site of double-strand break
GO:0042393 F histone binding
GO:0042803 F protein homodimerization activity
GO:0043486 P histone exchange
GO:0045190 P isotype switching
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0070534 P protein K63-linked ubiquitination
GO:0070535 P histone H2A K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
2959 O_BomaMSG12664_complete:A_BomaMSG_c22654_g1_i1
106bp
2960 O_BomaMSG12665_3prime_partial:A_BomaMSG_c22655_g1_i2
322bp
LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_24_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
2961 O_BomaMSG12666_3prime_partial:A_BomaMSG_c22656_g1_i1
504bp
tRNA-splicing_ligase_RtcB_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003972 F RNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0008452 F RNA ligase activity
GO:0016874 F ligase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0072669 C tRNA-splicing ligase complex
GO:2000237 P positive regulation of tRNA processing
2962 O_BomaMSG12667_internal:A_BomaMSG_c22658_g1_i1
191bp
SPRY_domain-containing_SOCS_box_protein_3-like_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0016567 P protein ubiquitination
GO:0035556 P intracellular signal transduction
2963 O_BomaMSG12668_5prime_partial:A_BomaMSG_c22658_g1_i2
201bp
SPRY_domain-containing_SOCS_box_protein_3-like_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0016567 P protein ubiquitination
GO:0035556 P intracellular signal transduction
2964 O_BomaMSG12669_3prime_partial:A_BomaMSG_c22659_g1_i1
380bp
anoctamin-4_isoform_X2_[Bombyx_mori]
GO:0005227 F calcium activated cation channel activity
GO:0005229 F intracellular calcium activated chloride channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005254 F chloride channel activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006821 P chloride transport
GO:0007200 P phospholipase C-activating G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0009897 C external side of plasma membrane
GO:0015111 F iodide transmembrane transporter activity
GO:0015705 P iodide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0034605 P cellular response to heat
GO:0034707 C chloride channel complex
GO:0035774 P positive regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0042391 P regulation of membrane potential
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0050965 P detection of temperature stimulus involved in sensory perception of pain
GO:0050966 P detection of mechanical stimulus involved in sensory perception of pain
GO:0060438 P trachea development
GO:0070062 C extracellular exosome
GO:0098655 P cation transmembrane transport
GO:1902476 P chloride transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
2965 O_BomaMSG1266_internal:A_BomaMSG_c5216_g1_i1
141bp
uncharacterized_protein_LOC110374727_[Helicoverpa_armigera]
2966 O_BomaMSG12670_internal:A_BomaMSG_c22659_g1_i2
495bp
anoctamin-4_isoform_X2_[Bombyx_mori]
GO:0005227 F calcium activated cation channel activity
GO:0005229 F intracellular calcium activated chloride channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005254 F chloride channel activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006821 P chloride transport
GO:0007200 P phospholipase C-activating G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0009897 C external side of plasma membrane
GO:0015111 F iodide transmembrane transporter activity
GO:0015705 P iodide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0034605 P cellular response to heat
GO:0034707 C chloride channel complex
GO:0035774 P positive regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0042391 P regulation of membrane potential
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0050965 P detection of temperature stimulus involved in sensory perception of pain
GO:0050966 P detection of mechanical stimulus involved in sensory perception of pain
GO:0060438 P trachea development
GO:0070062 C extracellular exosome
GO:0098655 P cation transmembrane transport
GO:1902476 P chloride transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
2967 O_BomaMSG12671_5prime_partial:A_BomaMSG_c22660_g1_i1
206bp
major_facilitator_superfamily_domain-containing_protein_12-like_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2968 O_BomaMSG12672_5prime_partial:A_BomaMSG_c22660_g1_i2
187bp
major_facilitator_superfamily_domain-containing_protein_12-like_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2969 O_BomaMSG12673_complete:A_BomaMSG_c22660_g1_i3
467bp
major_facilitator_superfamily_domain-containing_protein_12-like_isoform_X2_[Bombyx_mori]
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2970 O_BomaMSG12674_complete:A_BomaMSG_c22661_g1_i1
205bp
organic_cation_transporter_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0009437 P carnitine metabolic process
GO:0015226 F carnitine transmembrane transporter activity
GO:0015491 F cation:cation antiporter activity
GO:0015879 P carnitine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0031231 C intrinsic component of peroxisomal membrane
GO:0055085 P transmembrane transport
GO:0098655 P cation transmembrane transport
GO:1902603 P carnitine transmembrane transport
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