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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2641 O_BomaMSG12378_complete:A_BomaMSG_c22537_g1_i1
108bp
2642 O_BomaMSG12379_complete:A_BomaMSG_c22538_g1_i1
207bp
ATP-dependent_DNA_helicase_Q5_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000993 F RNA polymerase II complex binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008026 F helicase activity
GO:0009378 F four-way junction helicase activity
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0043140 F 3'-5' DNA helicase activity
GO:0051301 P cell division
GO:0051304 P chromosome separation
2643 O_BomaMSG1237_internal:A_BomaMSG_c5115_g1_i1
114bp
uncharacterized_protein_LOC101738259_[Bombyx_mori]
2644 O_BomaMSG12380_5prime_partial:A_BomaMSG_c22538_g1_i2
458bp
ATP-dependent_DNA_helicase_Q5_[Bombyx_mori]
2645 O_BomaMSG12381_internal:A_BomaMSG_c22539_g1_i1
266bp
nucleosomal_histone_kinase_1_[Bombyx_mori]
2646 O_BomaMSG12382_5prime_partial:A_BomaMSG_c22539_g1_i1
134bp
2647 O_BomaMSG12383_internal:A_BomaMSG_c22539_g1_i2
323bp
nucleosomal_histone_kinase_1_[Bombyx_mori]
2648 O_BomaMSG12384_5prime_partial:A_BomaMSG_c22539_g1_i2
134bp
2649 O_BomaMSG12385_3prime_partial:A_BomaMSG_c22539_g1_i2
110bp
2650 O_BomaMSG12386_internal:A_BomaMSG_c22540_g1_i1
220bp
probable_peroxisomal_acyl-coenzyme_A_oxidase_1_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005777 C peroxisome
GO:0006091 P generation of precursor metabolites and energy
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006693 P prostaglandin metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0019395 P fatty acid oxidation
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
2651 O_BomaMSG12387_internal:A_BomaMSG_c22540_g1_i2
293bp
probable_peroxisomal_acyl-coenzyme_A_oxidase_1_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005777 C peroxisome
GO:0006091 P generation of precursor metabolites and energy
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006693 P prostaglandin metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0019395 P fatty acid oxidation
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
2652 O_BomaMSG12388_5prime_partial:A_BomaMSG_c22541_g1_i1
205bp
calcium_channel_flower_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005262 F calcium channel activity
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030285 C integral component of synaptic vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0046530 P photoreceptor cell differentiation
GO:0048488 P synaptic vesicle endocytosis
GO:0070588 P calcium ion transmembrane transport
2653 O_BomaMSG12389_3prime_partial:A_BomaMSG_c22541_g1_i1
99bp
2654 O_BomaMSG1238_5prime_partial:A_BomaMSG_c5117_g1_i1
219bp
uncharacterized_protein_LOC101743157_isoform_X1_[Bombyx_mori]
2655 O_BomaMSG12390_5prime_partial:A_BomaMSG_c22541_g1_i2
120bp
calcium_channel_flower_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005262 F calcium channel activity
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030285 C integral component of synaptic vesicle membrane
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0046530 P photoreceptor cell differentiation
GO:0048488 P synaptic vesicle endocytosis
GO:0070588 P calcium ion transmembrane transport
2656 O_BomaMSG12391_5prime_partial:A_BomaMSG_c22542_g1_i1
167bp
2657 O_BomaMSG12392_5prime_partial:A_BomaMSG_c22542_g1_i2
154bp
2658 O_BomaMSG12393_5prime_partial:A_BomaMSG_c22542_g1_i4
110bp
serine/threonine-protein_kinase_Smg1-like,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006950 P response to stress
GO:0007274 P neuromuscular synaptic transmission
GO:0016246 P RNA interference
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0035195 P gene silencing by miRNA
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048489 P synaptic vesicle transport
GO:0050808 P synapse organization
2659 O_BomaMSG12394_5prime_partial:A_BomaMSG_c22543_g1_i1
546bp
DNA_polymerase_V_[Bombyx_mori]
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001649 P osteoblast differentiation
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006913 P nucleocytoplasmic transport
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0022904 P respiratory electron transport chain
GO:0032922 P circadian regulation of gene expression
GO:0042149 P cellular response to glucose starvation
GO:0042564 C NLS-dependent protein nuclear import complex
GO:0043231 C intracellular membrane-bounded organelle
GO:0043565 F sequence-specific DNA binding
GO:0044822 F RNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:0071158 P regulation of cell cycle
GO:0071897 P DNA biosynthetic process
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:2000210 P positive regulation of anoikis
2660 O_BomaMSG12395_complete:A_BomaMSG_c22543_g1_i1
159bp
2661 O_BomaMSG12396_5prime_partial:A_BomaMSG_c22543_g1_i2
374bp
DNA_polymerase_V_[Bombyx_mori]
2662 O_BomaMSG12397_complete:A_BomaMSG_c22543_g1_i2
159bp
2663 O_BomaMSG12398_5prime_partial:A_BomaMSG_c22544_g1_i1
229bp
tyrosine-protein_kinase_Src42A-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0006099 P tricarboxylic acid cycle
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007254 P JNK cascade
GO:0007275 P multicellular organism development
GO:0007391 P dorsal closure
GO:0007395 P dorsal closure, spreading of leading edge cells
GO:0007411 P axon guidance
GO:0007424 P open tracheal system development
GO:0007435 P salivary gland morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019233 P sensory perception of pain
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0034332 P adherens junction organization
GO:0036335 P intestinal stem cell homeostasis
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0042742 P defense response to bacterium
GO:0043277 P apoptotic cell clearance
GO:0045087 P innate immune response
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046529 P imaginal disc fusion, thorax closure
GO:0048749 P compound eye development
GO:0051017 P actin filament bundle assembly
GO:0090136 P epithelial cell-cell adhesion
2664 O_BomaMSG12399_complete:A_BomaMSG_c22544_g1_i1
162bp
2665 O_BomaMSG1239_complete:A_BomaMSG_c5117_g1_i1
167bp
2666 O_BomaMSG123_internal:A_BomaMSG_c585_g1_i1
131bp
PREDICTED:_uncharacterized_protein_LOC106711513_[Papilio_machaon]
2667 O_BomaMSG12400_complete:A_BomaMSG_c22544_g1_i1
146bp
2668 O_BomaMSG12401_complete:A_BomaMSG_c22545_g1_i1
196bp
uncharacterized_protein_LOC101744758_[Bombyx_mori]
2669 O_BomaMSG12402_complete:A_BomaMSG_c22546_g1_i1
184bp
uncharacterized_protein_LOC101740611_[Bombyx_mori]
2670 O_BomaMSG12403_complete:A_BomaMSG_c22546_g1_i1
132bp
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