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Search ORF from Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

2611

O_BomaMSG12350_complete:A_BomaMSG_c22521_g1_i2

284bp

bphl-like_protein_isoform_X1_[Bombyx_mori]

GO:0005737	C	cytoplasm
GO:0005739	C	mitochondrion
GO:0006520	P	cellular amino acid metabolic process
GO:0016787	F	hydrolase activity
GO:0070062	C	extracellular exosome

2612

O_BomaMSG12351_internal:A_BomaMSG_c22522_g1_i1

351bp

activating_signal_cointegrator_1_complex_subunit_2_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process

2613

O_BomaMSG12352_3prime_partial:A_BomaMSG_c22522_g1_i2

431bp

activating_signal_cointegrator_1_complex_subunit_2_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process

2614

O_BomaMSG12353_3prime_partial:A_BomaMSG_c22525_g1_i1

473bp

nucleolar_protein_11_[Bombyx_mori]

GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006364	P	rRNA processing
GO:0030490	P	maturation of SSU-rRNA
GO:1901838	P	positive regulation of transcription of nucleolar large rRNA by RNA polymerase I

2615

O_BomaMSG12354_internal:A_BomaMSG_c22525_g1_i3

285bp

nucleolar_protein_11_[Bombyx_mori]

2616

O_BomaMSG12355_5prime_partial:A_BomaMSG_c22526_g1_i1

573bp

putative_U5_small_nuclear_ribonucleoprotein_200_kDa_helicase_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0000381	P	regulation of alternative mRNA splicing, via spliceosome
GO:0000398	P	mRNA splicing, via spliceosome
GO:0003676	F	nucleic acid binding
GO:0003724	F	RNA helicase activity
GO:0004004	F	RNA helicase activity
GO:0004386	F	helicase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005681	C	spliceosomal complex
GO:0006397	P	mRNA processing
GO:0007067	P	mitotic cell cycle
GO:0007419	P	ventral cord development
GO:0008380	P	RNA splicing
GO:0016787	F	hydrolase activity
GO:0030532	C	small nuclear ribonucleoprotein complex
GO:0071011	C	precatalytic spliceosome
GO:0071013	C	catalytic step 2 spliceosome

2617

O_BomaMSG12356_5prime_partial:A_BomaMSG_c22526_g1_i1

222bp

2618

O_BomaMSG12357_complete:A_BomaMSG_c22526_g1_i1

133bp

hCG2002091,_isoform_CRA_d_[Homo_sapiens]

2619

O_BomaMSG12358_3prime_partial:A_BomaMSG_c22526_g1_i1

130bp

2620

O_BomaMSG12359_3prime_partial:A_BomaMSG_c22527_g1_i1

214bp

transcriptional_repressor_p66-alpha_isoform_X1_[Bombyx_mori]

GO:0000122	P	negative regulation of transcription by RNA polymerase II
GO:0000977	F	RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001568	P	blood vessel development
GO:0001701	P	in utero embryonic development
GO:0001842	P	neural fold formation
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0006306	P	DNA methylation
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0010172	P	embryonic body morphogenesis
GO:0012501	P	programmed cell death
GO:0016581	C	NuRD complex
GO:0016607	C	nuclear speck
GO:0021506	P	anterior neuropore closure
GO:0030674	F	protein-macromolecule adaptor activity
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046872	F	metal ion binding

2621

O_BomaMSG1235_5prime_partial:A_BomaMSG_c5112_g1_i1

210bp

protein_dispatched_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0006887	P	exocytosis
GO:0007224	P	smoothened signaling pathway
GO:0007275	P	multicellular organism development
GO:0007280	P	pole cell migration
GO:0008158	F	hedgehog receptor activity
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane

2622

O_BomaMSG12360_5prime_partial:A_BomaMSG_c22527_g1_i1

159bp

2623

O_BomaMSG12361_5prime_partial:A_BomaMSG_c22528_g1_i1

191bp

BTB/POZ_domain-containing_protein_At1g21780_[Bombyx_mori]

GO:0005634	C	nucleus
GO:0016567	P	protein ubiquitination
GO:0016607	C	nuclear speck
GO:0031463	C	Cul3-RING ubiquitin ligase complex
GO:0031625	F	ubiquitin protein ligase binding
GO:0043161	P	proteasome-mediated ubiquitin-dependent protein catabolic process

2624

O_BomaMSG12362_3prime_partial:A_BomaMSG_c22528_g2_i1

171bp

BTB/POZ_domain-containing_protein_At1g21780_[Bombyx_mori]

2625

O_BomaMSG12363_3prime_partial:A_BomaMSG_c22529_g1_i1

119bp

proteasome_26S_non-ATPase_subunit_9_[Bombyx_mori]

GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0008540	C	proteasome regulatory particle, base subcomplex
GO:0070682	P	proteasome regulatory particle assembly

2626

O_BomaMSG12364_3prime_partial:A_BomaMSG_c22529_g1_i2

198bp

proteasome_26S_non-ATPase_subunit_9_[Bombyx_mori]

GO:0000165	P	MAPK cascade
GO:0000209	P	protein polyubiquitination
GO:0002223	P	stimulatory C-type lectin receptor signaling pathway
GO:0002479	P	antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0003713	F	transcription coactivator activity
GO:0005515	F	protein binding
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0005838	C	proteasome regulatory particle
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0006521	P	regulation of cellular amino acid metabolic process
GO:0008540	C	proteasome regulatory particle, base subcomplex
GO:0031145	P	anaphase-promoting complex-dependent catabolic process
GO:0032024	P	positive regulation of insulin secretion
GO:0033209	P	tumor necrosis factor-mediated signaling pathway
GO:0038061	P	NIK/NF-kappaB signaling
GO:0038095	P	Fc-epsilon receptor signaling pathway
GO:0043161	P	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043425	F	bHLH transcription factor binding
GO:0043488	P	regulation of mRNA stability
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0046676	P	negative regulation of insulin secretion
GO:0050852	P	T cell receptor signaling pathway
GO:0051436	P	obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437	P	obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0060071	P	Wnt signaling pathway, planar cell polarity pathway
GO:0070682	P	proteasome regulatory particle assembly
GO:0090090	P	negative regulation of canonical Wnt signaling pathway
GO:0090263	P	positive regulation of canonical Wnt signaling pathway

2627

O_BomaMSG12365_complete:A_BomaMSG_c22530_g1_i1

188bp

39S_ribosomal_protein_L50,_mitochondrial_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005739	C	mitochondrion
GO:0005840	C	ribosome
GO:0008150	P	biological_process
GO:0030529	C	ribonucleoprotein complex

2628

O_BomaMSG12366_5prime_partial:A_BomaMSG_c22532_g2_i1

254bp

dysbindin-like_protein_[Bombyx_mori]

GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0007614	P	short-term memory
GO:0007616	P	long-term memory
GO:0008021	C	synaptic vesicle
GO:0008057	P	eye pigment granule organization
GO:0008344	P	adult locomotory behavior
GO:0008355	P	olfactory learning
GO:0031083	C	BLOC-1 complex
GO:0045963	P	negative regulation of dopamine metabolic process
GO:0048047	P	mating behavior, sex discrimination
GO:0048167	P	regulation of synaptic plasticity
GO:0050807	P	regulation of synapse organization
GO:0051968	P	positive regulation of synaptic transmission, glutamatergic
GO:0098527	C	neuromuscular junction of somatic muscle
GO:1900073	P	regulation of neuromuscular synaptic transmission

2629

O_BomaMSG12367_internal:A_BomaMSG_c22534_g1_i2

149bp

rho_GTPase-activating_protein_26_[Bombyx_mori]

GO:0005096	F	GTPase activator activity
GO:0007165	P	signal transduction
GO:0043547	P	positive regulation of GTPase activity

2630

O_BomaMSG12368_5prime_partial:A_BomaMSG_c22534_g1_i2

145bp

2631

O_BomaMSG12369_5prime_partial:A_BomaMSG_c22534_g1_i2

101bp

2632

O_BomaMSG1236_internal:A_BomaMSG_c5114_g1_i1

124bp

3-ketoacyl-CoA_thiolase,_mitochondrial_[Bombyx_mori]

GO:0003824	F	catalytic activity
GO:0003988	F	acetyl-CoA C-acyltransferase activity
GO:0005739	C	mitochondrion
GO:0005743	C	mitochondrial inner membrane
GO:0006629	P	lipid metabolic process
GO:0006631	P	fatty acid metabolic process
GO:0008152	P	metabolic process
GO:0016740	F	transferase activity
GO:0016746	F	acyltransferase activity
GO:0016747	F	acyltransferase activity, transferring groups other than amino-acyl groups
GO:0044822	F	RNA binding
GO:0070062	C	extracellular exosome
GO:0071456	P	cellular response to hypoxia
GO:1901029	P	negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
GO:1902109	P	negative regulation of mitochondrial membrane permeability involved in apoptotic process

2633

O_BomaMSG12370_3prime_partial:A_BomaMSG_c22534_g1_i3

247bp

rho_GTPase-activating_protein_26_[Bombyx_mori]

GO:0005096	F	GTPase activator activity
GO:0005515	F	protein binding
GO:0005543	F	phospholipid binding
GO:0005737	C	cytoplasm
GO:0005856	C	cytoskeleton
GO:0005925	C	focal adhesion
GO:0007165	P	signal transduction
GO:0030036	P	actin cytoskeleton organization
GO:0030054	C	cell junction
GO:0043547	P	positive regulation of GTPase activity
GO:0051056	P	regulation of small GTPase mediated signal transduction

2634

O_BomaMSG12371_5prime_partial:A_BomaMSG_c22534_g1_i3

151bp

2635

O_BomaMSG12372_5prime_partial:A_BomaMSG_c22534_g1_i3

101bp

2636

O_BomaMSG12373_complete:A_BomaMSG_c22535_g1_i1

497bp

leucine-rich_repeat_neuronal_protein_3_isoform_X1_[Bombyx_mori]

GO:0004872	F	signaling receptor activity
GO:0007155	P	cell adhesion
GO:0007165	P	signal transduction
GO:0007409	P	axonogenesis
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane