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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2221 O_BomaMSG119_5prime_partial:A_BomaMSG_c571_g1_i1
109bp
2222 O_BomaMSG11_5prime_partial:A_BomaMSG_c165_g1_i1
100bp
2223 O_BomaMSG12000_3prime_partial:A_BomaMSG_c22330_g1_i2
101bp
reverse_transcriptase_[Bombyx_mori]
2224 O_BomaMSG12001_internal:A_BomaMSG_c22331_g1_i1
109bp
heat_shock_protein_hsp21.4_[Bombyx_mori]
GO:0005212 F structural constituent of eye lens
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006937 P regulation of muscle contraction
GO:0042803 F protein homodimerization activity
2225 O_BomaMSG12002_complete:A_BomaMSG_c22331_g2_i1
188bp
heat_shock_protein_hsp21.4_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005886 C plasma membrane
GO:0009408 P response to heat
GO:0030018 C Z disc
GO:0030837 P negative regulation of actin filament polymerization
GO:0042802 F identical protein binding
GO:0043292 C contractile fiber
GO:0051016 P barbed-end actin filament capping
GO:0051693 P actin filament capping
2226 O_BomaMSG12003_3prime_partial:A_BomaMSG_c22333_g1_i1
128bp
thioredoxin-like_protein_4A_[Bombyx_mori]
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0051301 P cell division
2227 O_BomaMSG12004_5prime_partial:A_BomaMSG_c22333_g1_i1
114bp
nucleoside_diphosphate_kinase,_putative_[Phytophthora_infestans_T30-4]
2228 O_BomaMSG12005_5prime_partial:A_BomaMSG_c22334_g2_i1
325bp
fibrosin-1-like_protein_isoform_X4_[Bombyx_mori]
GO:0044822 F RNA binding
2229 O_BomaMSG12006_complete:A_BomaMSG_c22334_g2_i1
124bp
2230 O_BomaMSG12007_complete:A_BomaMSG_c22334_g2_i1
100bp
2231 O_BomaMSG12008_internal:A_BomaMSG_c22336_g1_i1
405bp
protein_patched_[Bombyx_mori]
GO:0001746 P Bolwig's organ morphogenesis
GO:0004888 F transmembrane signaling receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005929 C cilium
GO:0006508 P proteolysis
GO:0006898 P receptor-mediated endocytosis
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0007346 P regulation of mitotic cell cycle
GO:0007350 P blastoderm segmentation
GO:0007367 P segment polarity determination
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0007455 P eye-antennal disc morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008158 F hedgehog receptor activity
GO:0008406 P gonad development
GO:0009880 P embryonic pattern specification
GO:0009952 P anterior/posterior pattern specification
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0030139 C endocytic vesicle
GO:0030228 F lipoprotein particle receptor activity
GO:0030707 P ovarian follicle cell development
GO:0035225 P determination of genital disc primordium
GO:0042078 P germ-line stem cell division
GO:0042306 P regulation of protein import into nucleus
GO:0042981 P regulation of apoptotic process
GO:0045169 C fusome
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0048099 P anterior/posterior lineage restriction, imaginal disc
GO:0048100 P wing disc anterior/posterior pattern formation
GO:0048103 P somatic stem cell division
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0055088 P lipid homeostasis
GO:2000274 P regulation of epithelial cell migration, open tracheal system
2232 O_BomaMSG12009_internal:A_BomaMSG_c22336_g1_i2
472bp
protein_patched_[Bombyx_mori]
GO:0001746 P Bolwig's organ morphogenesis
GO:0004888 F transmembrane signaling receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005929 C cilium
GO:0006508 P proteolysis
GO:0006898 P receptor-mediated endocytosis
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0007346 P regulation of mitotic cell cycle
GO:0007350 P blastoderm segmentation
GO:0007367 P segment polarity determination
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0007455 P eye-antennal disc morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0008158 F hedgehog receptor activity
GO:0008406 P gonad development
GO:0009880 P embryonic pattern specification
GO:0009952 P anterior/posterior pattern specification
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0030139 C endocytic vesicle
GO:0030228 F lipoprotein particle receptor activity
GO:0030707 P ovarian follicle cell development
GO:0035225 P determination of genital disc primordium
GO:0042078 P germ-line stem cell division
GO:0042306 P regulation of protein import into nucleus
GO:0042981 P regulation of apoptotic process
GO:0045169 C fusome
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0048099 P anterior/posterior lineage restriction, imaginal disc
GO:0048100 P wing disc anterior/posterior pattern formation
GO:0048103 P somatic stem cell division
GO:0048471 C perinuclear region of cytoplasm
GO:0048477 P oogenesis
GO:0055088 P lipid homeostasis
GO:2000274 P regulation of epithelial cell migration, open tracheal system
2233 O_BomaMSG1200_internal:A_BomaMSG_c5005_g1_i1
160bp
tetratricopeptide_repeat_protein_27_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0031505 P fungal-type cell wall organization
GO:0043234 C protein-containing complex
2234 O_BomaMSG12010_5prime_partial:A_BomaMSG_c22336_g1_i2
114bp
2235 O_BomaMSG12011_complete:A_BomaMSG_c22337_g1_i2
251bp
DNA-binding_protein_RFXANK_[Bombyx_mori]
GO:0003712 F transcription coregulator activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016020 C membrane
GO:0030169 F low-density lipoprotein particle binding
GO:0042826 F histone deacetylase binding
2236 O_BomaMSG12012_complete:A_BomaMSG_c22338_g1_i1
184bp
39S_ribosomal_protein_L43,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
2237 O_BomaMSG12013_complete:A_BomaMSG_c22339_g1_i1
554bp
beta-catenin-like_protein_1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016445 P somatic diversification of immunoglobulins
GO:0019899 F enzyme binding
GO:0043065 P positive regulation of apoptotic process
2238 O_BomaMSG12014_internal:A_BomaMSG_c22340_g1_i1
218bp
CCR4-NOT_transcription_complex_subunit_10_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008150 P biological_process
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
2239 O_BomaMSG12015_internal:A_BomaMSG_c22341_g1_i1
343bp
tetratricopeptide_repeat_protein_4_[Bombyx_mori]
2240 O_BomaMSG12016_internal:A_BomaMSG_c22341_g1_i2
210bp
tetratricopeptide_repeat_protein_4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
2241 O_BomaMSG12017_internal:A_BomaMSG_c22341_g2_i1
124bp
NADH_dehydrogenase_[ubiquinone]_1_beta_subcomplex_subunit_9-like_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0016020 C membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0070469 C respirasome
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
2242 O_BomaMSG12018_3prime_partial:A_BomaMSG_c22341_g1_i3
362bp
tetratricopeptide_repeat_protein_4_[Bombyx_mori]
2243 O_BomaMSG12019_complete:A_BomaMSG_c22342_g1_i1
265bp
low_molecular_30_kDa_lipoprotein_PBMHP-12_isoform_X1_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005615 C extracellular space
2244 O_BomaMSG1201_internal:A_BomaMSG_c5019_g1_i1
150bp
mothers_against_decapentaplegic_homolog_3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000983 F RNA polymerase II general transcription initiation factor activity
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0000988 F obsolete transcription factor activity, protein binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001501 P skeletal system development
GO:0001649 P osteoblast differentiation
GO:0001657 P ureteric bud development
GO:0001666 P response to hypoxia
GO:0001701 P in utero embryonic development
GO:0001707 P mesoderm formation
GO:0001756 P somitogenesis
GO:0001889 P liver development
GO:0001933 P negative regulation of protein phosphorylation
GO:0001947 P heart looping
GO:0002076 P osteoblast development
GO:0002520 P immune system development
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005160 F transforming growth factor beta receptor binding
GO:0005515 F protein binding
GO:0005518 F collagen binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005637 C nuclear inner membrane
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006810 P transport
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006955 P immune response
GO:0007050 P regulation of cell cycle
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007183 P SMAD protein complex assembly
GO:0007369 P gastrulation
GO:0007492 P endoderm development
GO:0008013 F beta-catenin binding
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0009880 P embryonic pattern specification
GO:0010628 P positive regulation of gene expression
GO:0010694 P positive regulation of alkaline phosphatase activity
GO:0010718 P positive regulation of epithelial to mesenchymal transition
GO:0016202 P regulation of striated muscle tissue development
GO:0017015 P regulation of transforming growth factor beta receptor signaling pathway
GO:0019049 P mitigation of host defenses by virus
GO:0019899 F enzyme binding
GO:0019901 F protein kinase binding
GO:0019902 F phosphatase binding
GO:0023019 P signal transduction involved in regulation of gene expression
GO:0030308 P negative regulation of cell growth
GO:0030335 P positive regulation of cell migration
GO:0030501 P positive regulation of bone mineralization
GO:0030618 F obsolete transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity
GO:0030878 P thyroid gland development
GO:0031490 F chromatin DNA binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032332 P positive regulation of chondrocyte differentiation
GO:0032731 P positive regulation of interleukin-1 beta production
GO:0032909 P regulation of transforming growth factor beta2 production
GO:0032916 P positive regulation of transforming growth factor beta3 production
GO:0032924 P activin receptor signaling pathway
GO:0033689 P negative regulation of osteoblast proliferation
GO:0035413 P positive regulation of canonical Wnt signaling pathway
GO:0035556 P intracellular signal transduction
GO:0038092 P nodal signaling pathway
GO:0042110 P T cell activation
GO:0042177 P negative regulation of protein catabolic process
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042993 P obsolete positive regulation of transcription factor import into nucleus
GO:0043066 P negative regulation of apoptotic process
GO:0043130 F ubiquitin binding
GO:0043234 C protein-containing complex
GO:0043235 C receptor complex
GO:0043425 F bHLH transcription factor binding
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045216 P cell-cell junction organization
GO:0045599 P negative regulation of fat cell differentiation
GO:0045668 P negative regulation of osteoblast differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045930 P negative regulation of mitotic cell cycle
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0048340 P paraxial mesoderm morphogenesis
GO:0048589 P developmental growth
GO:0048617 P embryonic foregut morphogenesis
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0050678 P regulation of epithelial cell proliferation
GO:0050728 P negative regulation of inflammatory response
GO:0050776 P regulation of immune response
GO:0050821 P protein stabilization
GO:0050927 P positive regulation of positive chemotaxis
GO:0051098 P regulation of binding
GO:0051496 P positive regulation of stress fiber assembly
GO:0051894 P positive regulation of focal adhesion assembly
GO:0060039 P pericardium development
GO:0060290 P transdifferentiation
GO:0060395 P SMAD protein signal transduction
GO:0061045 P negative regulation of wound healing
GO:0070306 P lens fiber cell differentiation
GO:0070410 F co-SMAD binding
GO:0070412 F R-SMAD binding
GO:0071141 C SMAD protein complex
GO:0071144 C heteromeric SMAD protein complex
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:0097191 P extrinsic apoptotic signaling pathway
GO:0097296 P activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
GO:1901203 P positive regulation of extracellular matrix assembly
2245 O_BomaMSG12020_internal:A_BomaMSG_c22342_g1_i2
112bp
2246 O_BomaMSG12021_internal:A_BomaMSG_c22342_g1_i2
112bp
RecName:_Full=Low_molecular_30_kDa_lipoprotein_PBMHPC-23;_Flags:_Precursor
GO:0005576 C extracellular region
GO:0005615 C extracellular space
2247 O_BomaMSG12022_complete:A_BomaMSG_c22343_g1_i1
451bp
LOW_QUALITY_PROTEIN:_zinc_finger_protein_Noc_[Bombyx_mori]
GO:0001752 P compound eye photoreceptor fate commitment
GO:0002121 P inter-male aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007420 P brain development
GO:0007424 P open tracheal system development
GO:0007430 P terminal branching, open tracheal system
GO:0008056 P ocellus development
GO:0008283 P cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0035214 P eye-antennal disc development
GO:0035218 P leg disc development
GO:0035220 P wing disc development
GO:0046872 F metal ion binding
2248 O_BomaMSG12023_5prime_partial:A_BomaMSG_c22343_g1_i2
340bp
LOW_QUALITY_PROTEIN:_zinc_finger_protein_Noc_[Bombyx_mori]
GO:0001752 P compound eye photoreceptor fate commitment
GO:0002121 P inter-male aggressive behavior
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007420 P brain development
GO:0007424 P open tracheal system development
GO:0007430 P terminal branching, open tracheal system
GO:0008056 P ocellus development
GO:0008283 P cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0035214 P eye-antennal disc development
GO:0035218 P leg disc development
GO:0035220 P wing disc development
GO:0046872 F metal ion binding
2249 O_BomaMSG12024_3prime_partial:A_BomaMSG_c22344_g1_i1
271bp
putative_serine/threonine-protein_kinase_haspin_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
GO:0072354 F histone kinase activity (H3-T3 specific)
GO:0072355 P histone H3-T3 phosphorylation
2250 O_BomaMSG12025_5prime_partial:A_BomaMSG_c22345_g1_i2
122bp
inactive_pancreatic_lipase-related_protein_1_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005811 C lipid droplet
GO:0005875 C microtubule associated complex
GO:0007296 P vitellogenesis
GO:0007548 P sex differentiation
GO:0008152 P metabolic process
GO:0052689 F carboxylic ester hydrolase activity
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