SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/206471
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
6001 A_BomoIG_DN20896_c0_g1_i1
206bp
unnamed_protein_product_[Oncorhynchus_mykiss]
FPKM:0.00 TPM:0.00
6002 A_BomoIG_DN20897_c0_g1_i1
214bp
FPKM:0.00 TPM:0.00
6003 A_BomoIG_DN20901_c0_g1_i1
351bp
FPKM:0.20 TPM:0.11
6004 A_BomoIG_DN20902_c0_g1_i1
251bp
FPKM:0.00 TPM:0.00
6005 A_BomoIG_DN20903_c0_g1_i1
333bp
FPKM:0.86 TPM:0.48
6006 A_BomoIG_DN20907_c0_g1_i1
336bp
FPKM:2.65 TPM:1.48
6007 A_BomoIG_DN20908_c0_g1_i1
1887bp
 semaphorin-5B_isoform_X1_[Bombyx_mori]
GO:0001755 P neural crest cell migration
GO:0001938 P positive regulation of endothelial cell proliferation
GO:0002043 P blood vessel endothelial cell proliferation involved in sprouting angiogenesis
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007162 P negative regulation of cell adhesion
GO:0007267 P cell-cell signaling
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007413 P axonal fasciculation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021536 P diencephalon development
GO:0030154 P cell differentiation
GO:0030215 F semaphorin receptor binding
GO:0030335 P positive regulation of cell migration
GO:0030836 P positive regulation of actin filament depolymerization
GO:0035373 F chondroitin sulfate proteoglycan binding
GO:0035413 P positive regulation of canonical Wnt signaling pathway
GO:0043395 F heparan sulfate proteoglycan binding
GO:0045499 F chemorepellent activity
GO:0045545 F syndecan binding
GO:0045766 P positive regulation of angiogenesis
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0048843 P negative regulation of axon extension involved in axon guidance
GO:0050918 P positive chemotaxis
GO:0050919 P negative chemotaxis
GO:0051897 P positive regulation of protein kinase B signaling
GO:0060326 P cell chemotaxis
GO:0070062 C extracellular exosome
GO:0071526 P semaphorin-plexin signaling pathway
GO:1990256 P signal clustering
GO:2000352 P negative regulation of endothelial cell apoptotic process
GO:2001028 P positive regulation of endothelial cell chemotaxis
FPKM:3.88 TPM:2.16
6008 A_BomoIG_DN20908_c0_g1_i2
2239bp
 semaphorin-5A_isoform_X2_[Bombyx_mori]
GO:0001755 P neural crest cell migration
GO:0001938 P positive regulation of endothelial cell proliferation
GO:0002043 P blood vessel endothelial cell proliferation involved in sprouting angiogenesis
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0007162 P negative regulation of cell adhesion
GO:0007267 P cell-cell signaling
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007413 P axonal fasciculation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021536 P diencephalon development
GO:0030154 P cell differentiation
GO:0030215 F semaphorin receptor binding
GO:0030335 P positive regulation of cell migration
GO:0030836 P positive regulation of actin filament depolymerization
GO:0035373 F chondroitin sulfate proteoglycan binding
GO:0035413 P positive regulation of canonical Wnt signaling pathway
GO:0043395 F heparan sulfate proteoglycan binding
GO:0045499 F chemorepellent activity
GO:0045545 F syndecan binding
GO:0045766 P positive regulation of angiogenesis
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0048843 P negative regulation of axon extension involved in axon guidance
GO:0050918 P positive chemotaxis
GO:0050919 P negative chemotaxis
GO:0051897 P positive regulation of protein kinase B signaling
GO:0060326 P cell chemotaxis
GO:0070062 C extracellular exosome
GO:0071526 P semaphorin-plexin signaling pathway
GO:1990256 P signal clustering
GO:2000352 P negative regulation of endothelial cell apoptotic process
GO:2001028 P positive regulation of endothelial cell chemotaxis
FPKM:6.69 TPM:3.73
6009 A_BomoIG_DN20909_c0_g1_i1
231bp
FPKM:0.00 TPM:0.00
6010 A_BomoIG_DN20912_c0_g1_i1
230bp
FPKM:0.00 TPM:0.00
6011 A_BomoIG_DN20915_c0_g1_i1
291bp
FPKM:0.00 TPM:0.00
6012 A_BomoIG_DN20918_c0_g1_i1
277bp
FPKM:0.31 TPM:0.17
6013 A_BomoIG_DN20919_c0_g1_i1
207bp
FPKM:0.00 TPM:0.00
6014 A_BomoIG_DN20923_c0_g1_i1
473bp
FPKM:0.85 TPM:0.47
6015 A_BomoIG_DN20923_c0_g2_i1
258bp
FPKM:1.47 TPM:0.82
6016 A_BomoIG_DN20924_c0_g1_i1
293bp
FPKM:0.00 TPM:0.00
6017 A_BomoIG_DN20928_c0_g1_i1
204bp
FPKM:4.29 TPM:2.39
6018 A_BomoIG_DN20929_c0_g1_i1
375bp
FPKM:1.07 TPM:0.59
6019 A_BomoIG_DN20935_c0_g1_i1
986bp
FPKM:0.28 TPM:0.16
6020 A_BomoIG_DN20936_c0_g1_i1
306bp
FPKM:2.28 TPM:1.27
6021 A_BomoIG_DN20937_c0_g1_i1
376bp
FPKM:3.83 TPM:2.13
6022 A_BomoIG_DN20939_c0_g1_i1
762bp
 multiple_C2_and_transmembrane_domain-containing_protein_1_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019722 P calcium-mediated signaling
FPKM:5.16 TPM:2.87
6023 A_BomoIG_DN2093_c0_g1_i1
209bp
FPKM:1.32 TPM:0.73
6024 A_BomoIG_DN20940_c0_g1_i1
394bp
 juvenile_hormone_esterase_[Bombyx_mori]
GO:0004453 F juvenile-hormone esterase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
FPKM:0.16 TPM:0.09
6025 A_BomoIG_DN20941_c0_g1_i1
354bp
FPKM:2.41 TPM:1.34
6026 A_BomoIG_DN20943_c0_g1_i1
216bp
FPKM:0.00 TPM:0.00
6027 A_BomoIG_DN20945_c0_g1_i1
302bp
FPKM:0.00 TPM:0.00
6028 A_BomoIG_DN20947_c0_g1_i1
586bp
 fatty_acid_synthase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
6029 A_BomoIG_DN20947_c0_g2_i1
221bp
 fatty_acid_synthase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
6030 A_BomoIG_DN20949_c0_g1_i1
249bp
FPKM:0.20 TPM:0.11
previous next from show/206471

- SilkBase 1999-2023 -