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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
361 A_BomoOtmSK_comp10200_c0_seq1
1971bp
 N-acetylgalactosaminyltransferase_7_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006486 P protein glycosylation
GO:0009312 P oligosaccharide biosynthetic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
FPKM:10.88 TPM:11.73
362 A_BomoOtmSK_comp10201_c0_seq1
633bp
 hypothetical_protein_RR48_02760_[Papilio_machaon]
FPKM:2.30 TPM:2.48
363 A_BomoOtmSK_comp102021_c0_seq1
1254bp
FPKM:3.15 TPM:3.39
364 A_BomoOtmSK_comp1020268_c0_seq1
234bp
FPKM:1.50 TPM:1.62
365 A_BomoOtmSK_comp1020292_c0_seq1
352bp
FPKM:1.01 TPM:1.09
366 A_BomoOtmSK_comp10202_c0_seq1
2545bp
 nicastrin_[Bombyx_mori]
GO:0005770 C late endosome
GO:0005886 C plasma membrane
GO:0006509 P membrane protein ectodomain proteolysis
GO:0007010 P cytoskeleton organization
GO:0007219 P Notch signaling pathway
GO:0007220 P Notch receptor processing
GO:0008594 P photoreceptor cell morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016485 P protein processing
GO:0045314 P regulation of compound eye photoreceptor development
GO:0045463 P R8 cell development
GO:0046331 P lateral inhibition
GO:0055037 C recycling endosome
GO:0070765 C gamma-secretase complex
FPKM:10.10 TPM:10.89
367 A_BomoOtmSK_comp10203_c0_seq1
1163bp
 N-acetyl-glucosamine-6-phosphate_isomerase_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005777 C peroxisome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0009306 P protein secretion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019233 P sensory perception of pain
FPKM:5.14 TPM:5.55
368 A_BomoOtmSK_comp10203_c0_seq2
1225bp
 N-acetyl-glucosamine-6-phosphate_isomerase_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005777 C peroxisome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0009306 P protein secretion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019233 P sensory perception of pain
FPKM:14.95 TPM:16.12
369 A_BomoOtmSK_comp10203_c0_seq3
1210bp
 N-acetyl-glucosamine-6-phosphate_isomerase_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005777 C peroxisome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0009306 P protein secretion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019233 P sensory perception of pain
FPKM:9.20 TPM:9.92
370 A_BomoOtmSK_comp10204_c0_seq1
2591bp
 squamous_cell_carcinoma_antigen_recognized_by_T-cells_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
FPKM:9.82 TPM:10.59
371 A_BomoOtmSK_comp102054_c0_seq1
1702bp
 uncharacterized_protein_LOC110385577_[Bombyx_mori]
FPKM:3.93 TPM:4.23
372 A_BomoOtmSK_comp102055_c0_seq1
1292bp
 cell_cycle_checkpoint_control_protein_RAD9A_[Bombyx_mori]
GO:0000075 P cell cycle checkpoint signaling
GO:0000076 P DNA replication checkpoint signaling
GO:0000077 P DNA damage checkpoint signaling
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0008853 F exodeoxyribonuclease III activity
GO:0016787 F hydrolase activity
GO:0017124 F SH3 domain binding
GO:0019899 F enzyme binding
GO:0019901 F protein kinase binding
GO:0030896 C checkpoint clamp complex
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0042826 F histone deacetylase binding
GO:0071479 P cellular response to ionizing radiation
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:1902231 P positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage
FPKM:3.82 TPM:4.12
373 A_BomoOtmSK_comp10206_c0_seq1
566bp
 E3_ubiquitin-protein_ligase_ZNF598_isoform_X1_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
374 A_BomoOtmSK_comp10206_c0_seq2
1267bp
 E3_ubiquitin-protein_ligase_ZNF598_isoform_X1_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:8.06 TPM:8.69
375 A_BomoOtmSK_comp10206_c0_seq3
638bp
 E3_ubiquitin-protein_ligase_ZNF598_isoform_X1_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
376 A_BomoOtmSK_comp10206_c0_seq4
1195bp
 E3_ubiquitin-protein_ligase_ZNF598_isoform_X1_[Bombyx_mori]
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:1.78 TPM:1.92
377 A_BomoOtmSK_comp10207_c0_seq1
1639bp
 prostaglandin_E2_receptor_EP2_subtype_[Bombyx_mori]
GO:0001785 F prostaglandin J receptor activity
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0004956 F prostaglandin D receptor activity
GO:0005886 C plasma membrane
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030238 P male sex determination
GO:0030431 P sleep
GO:0046085 P adenosine metabolic process
GO:0071799 P cellular response to prostaglandin D stimulus
FPKM:0.56 TPM:0.60
378 A_BomoOtmSK_comp10207_c0_seq2
1529bp
 prostaglandin_E2_receptor_EP2_subtype_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007601 P visual perception
GO:0007602 P phototransduction
GO:0009881 F photoreceptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0018298 P protein-chromophore linkage
GO:0050896 P response to stimulus
FPKM:2.99 TPM:3.23
379 A_BomoOtmSK_comp10208_c0_seq1
2032bp
 uncharacterized_protein_LOC101735385_isoform_X1_[Bombyx_mori]
FPKM:7.57 TPM:8.16
380 A_BomoOtmSK_comp10208_c0_seq2
2117bp
 uncharacterized_protein_LOC101735385_isoform_X1_[Bombyx_mori]
FPKM:0.81 TPM:0.87
381 A_BomoOtmSK_comp10209_c0_seq1
3258bp
 long-chain_fatty_acid_transport_protein_4_isoform_X1_[Bombyx_mori]
GO:0000038 P very long-chain fatty acid metabolic process
GO:0000166 F nucleotide binding
GO:0001579 P medium-chain fatty acid transport
GO:0001676 P long-chain fatty acid metabolic process
GO:0003824 F catalytic activity
GO:0004467 F long-chain fatty acid-CoA ligase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005902 C microvillus
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007584 P response to nutrient
GO:0008152 P metabolic process
GO:0015245 F fatty acid transmembrane transporter activity
GO:0015908 P fatty acid transport
GO:0015909 P long-chain fatty acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016874 F ligase activity
GO:0031526 C brush border membrane
GO:0031957 F very long-chain fatty acid-CoA ligase activity
GO:0042760 P very long-chain fatty acid catabolic process
GO:0043588 P skin development
GO:0044539 P long-chain fatty acid import into cell
FPKM:27.31 TPM:29.44
382 A_BomoOtmSK_comp1020_c0_seq1
383bp
 lectin_5_precursor_[Bombyx_mori]
GO:0002250 P adaptive immune response
GO:0002376 P immune system process
GO:0005537 F mannose binding
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030246 F carbohydrate binding
GO:0045087 P innate immune response
GO:0046872 F metal ion binding
FPKM:1.29 TPM:1.39
383 A_BomoOtmSK_comp10210_c0_seq1
567bp
 CMP-sialic_acid_transporter_1_[Helicoverpa_armigera]
GO:0000139 C Golgi membrane
GO:0005351 F carbohydrate:proton symporter activity
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.24 TPM:2.42
384 A_BomoOtmSK_comp10210_c1_seq1
482bp
 CMP-sialic_acid_transporter_1_[Bombyx_mori]
FPKM:1.12 TPM:1.20
385 A_BomoOtmSK_comp10210_c1_seq2
461bp
 CMP-sialic_acid_transporter_1_[Bombyx_mori]
FPKM:0.97 TPM:1.04
386 A_BomoOtmSK_comp10210_c2_seq1
224bp
 PREDICTED:_CMP-sialic_acid_transporter_1_[Plutella_xylostella]
FPKM:0.88 TPM:0.95
387 A_BomoOtmSK_comp10211_c0_seq1
803bp
FPKM:6.54 TPM:7.05
388 A_BomoOtmSK_comp10211_c1_seq1
345bp
FPKM:1.06 TPM:1.14
389 A_BomoOtmSK_comp1021266_c0_seq1
312bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like,_partial_[Dinoponera_quadriceps]
FPKM:0.99 TPM:1.07
390 A_BomoOtmSK_comp10212_c0_seq1
449bp
 PREDICTED:_uncharacterized_protein_LOC106125025_[Papilio_xuthus]
FPKM:1.45 TPM:1.57
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