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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1501 A_BomoOtmSK_comp10508_c0_seq1
1790bp
FPKM:0.15 TPM:0.17
1502 A_BomoOtmSK_comp10508_c0_seq2
1960bp
 GILT-like_protein_1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005576 C extracellular region
GO:0005764 C lysosome
GO:0016491 F oxidoreductase activity
GO:0016667 F oxidoreductase activity, acting on a sulfur group of donors
GO:0042590 P antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.37 TPM:1.48
1503 A_BomoOtmSK_comp10508_c0_seq3
2832bp
 GILT-like_protein_1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005576 C extracellular region
GO:0005764 C lysosome
GO:0016491 F oxidoreductase activity
GO:0016667 F oxidoreductase activity, acting on a sulfur group of donors
GO:0042590 P antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.69 TPM:1.82
1504 A_BomoOtmSK_comp10508_c0_seq4
1439bp
FPKM:0.00 TPM:0.00
1505 A_BomoOtmSK_comp10508_c0_seq5
2311bp
 GILT-like_protein_1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005576 C extracellular region
GO:0005764 C lysosome
GO:0016491 F oxidoreductase activity
GO:0016667 F oxidoreductase activity, acting on a sulfur group of donors
GO:0042590 P antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.04 TPM:0.05
1506 A_BomoOtmSK_comp10508_c0_seq6
2311bp
 GILT-like_protein_1_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005576 C extracellular region
GO:0005764 C lysosome
GO:0016491 F oxidoreductase activity
GO:0016667 F oxidoreductase activity, acting on a sulfur group of donors
GO:0042590 P antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.04 TPM:0.05
1507 A_BomoOtmSK_comp1050919_c0_seq1
252bp
FPKM:0.59 TPM:0.63
1508 A_BomoOtmSK_comp1050922_c0_seq1
216bp
 hypothetical_protein_RF55_22015_[Lasius_niger]
FPKM:1.02 TPM:1.10
1509 A_BomoOtmSK_comp1050985_c0_seq1
315bp
 lipase_member_H-B_[Bombyx_mori]
FPKM:1.29 TPM:1.39
1510 A_BomoOtmSK_comp1050986_c0_seq1
203bp
FPKM:1.33 TPM:1.43
1511 A_BomoOtmSK_comp10509_c0_seq1
381bp
 PREDICTED:_uncharacterized_protein_LOC106125042_[Papilio_xuthus]
FPKM:1.52 TPM:1.63
1512 A_BomoOtmSK_comp1051116_c0_seq1
236bp
FPKM:1.46 TPM:1.57
1513 A_BomoOtmSK_comp1051182_c0_seq1
319bp
FPKM:0.63 TPM:0.67
1514 A_BomoOtmSK_comp1051194_c0_seq1
286bp
 separin_isoform_X2_[Bombyx_mori]
FPKM:0.82 TPM:0.88
1515 A_BomoOtmSK_comp10511_c0_seq1
2102bp
 cyclin-C_[Bombyx_mori]
GO:0000307 C cyclin-dependent protein kinase holoenzyme complex
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
FPKM:4.37 TPM:4.71
1516 A_BomoOtmSK_comp1051292_c0_seq1
217bp
 cuticular_protein_RR-2_motif_79_precursor_[Bombyx_mori]
GO:0042302 F structural constituent of cuticle
FPKM:2.00 TPM:2.15
1517 A_BomoOtmSK_comp10512_c0_seq1
777bp
FPKM:4.79 TPM:5.17
1518 A_BomoOtmSK_comp10512_c0_seq2
651bp
FPKM:1.38 TPM:1.49
1519 A_BomoOtmSK_comp1051309_c0_seq1
295bp
FPKM:0.75 TPM:0.81
1520 A_BomoOtmSK_comp10513_c0_seq1
387bp
FPKM:1.05 TPM:1.13
1521 A_BomoOtmSK_comp10513_c1_seq1
291bp
FPKM:0.78 TPM:0.84
1522 A_BomoOtmSK_comp1051437_c0_seq1
284bp
 semaphorin-2A_isoform_X2_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0030154 P cell differentiation
FPKM:1.66 TPM:1.79
1523 A_BomoOtmSK_comp1051459_c0_seq1
230bp
FPKM:0.80 TPM:0.86
1524 A_BomoOtmSK_comp1051479_c0_seq1
238bp
FPKM:1.41 TPM:1.52
1525 A_BomoOtmSK_comp1051494_c0_seq1
295bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.38 TPM:0.41
1526 A_BomoOtmSK_comp10514_c0_seq1
350bp
FPKM:1.54 TPM:1.66
1527 A_BomoOtmSK_comp1051521_c0_seq1
205bp
 PREDICTED:_E3_SUMO-protein_ligase_KIAA1586-like_[Acyrthosiphon_pisum]
FPKM:1.27 TPM:1.37
1528 A_BomoOtmSK_comp1051529_c0_seq1
231bp
 CUB_and_sushi_domain-containing_protein_3_isoform_X3_[Bombyx_mori]
GO:0003682 F chromatin binding
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0007155 P cell adhesion
GO:0008150 P biological_process
GO:0016020 C membrane
FPKM:1.57 TPM:1.69
1529 A_BomoOtmSK_comp1051585_c0_seq1
240bp
 DNA_N6-methyl_adenine_demethylase_isoform_X5_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007281 P germ cell development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0035511 P oxidative DNA demethylation
GO:0035514 F DNA demethylase activity
GO:0035516 F oxidative DNA demethylase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:1901537 P positive regulation of DNA demethylation
FPKM:1.37 TPM:1.48
1530 A_BomoOtmSK_comp1051597_c0_seq1
282bp
FPKM:0.42 TPM:0.46
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