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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1381 A_BomoOtmSK_comp10482_c0_seq3
1508bp
 isocitrate_dehydrogenase_[NAD]_subunit_beta,_mitochondrial_[Bombyx_mori]
GO:0000287 F magnesium ion binding
GO:0004449 F isocitrate dehydrogenase (NAD+) activity
GO:0005739 C mitochondrion
GO:0006099 P tricarboxylic acid cycle
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046872 F metal ion binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:45.45 TPM:49.00
1382 A_BomoOtmSK_comp1048353_c0_seq1
207bp
FPKM:0.00 TPM:0.00
1383 A_BomoOtmSK_comp1048373_c0_seq1
366bp
 uncharacterized_protein_LOC101744858_isoform_X1_[Bombyx_mori]
FPKM:0.94 TPM:1.01
1384 A_BomoOtmSK_comp1048390_c0_seq1
223bp
FPKM:0.90 TPM:0.97
1385 A_BomoOtmSK_comp1048397_c0_seq1
206bp
FPKM:1.25 TPM:1.34
1386 A_BomoOtmSK_comp10483_c0_seq1
226bp
FPKM:0.85 TPM:0.92
1387 A_BomoOtmSK_comp10483_c1_seq1
639bp
 LOW_QUALITY_PROTEIN:_type_II_inositol_1,4,5-trisphosphate_5-phosphatase_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0004439 F phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007283 P spermatogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0030317 P flagellated sperm motility
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0043547 P positive regulation of GTPase activity
GO:0043647 P inositol phosphate metabolic process
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0046872 F metal ion binding
GO:0051056 P regulation of small GTPase mediated signal transduction
GO:0052658 F inositol-1,4,5-trisphosphate 5-phosphatase activity
GO:0052659 F inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity
GO:0070613 P regulation of protein processing
FPKM:1.89 TPM:2.04
1388 A_BomoOtmSK_comp10483_c2_seq1
258bp
FPKM:1.09 TPM:1.17
1389 A_BomoOtmSK_comp10484_c0_seq1
3120bp
 scaffold_protein_salvador_[Bombyx_mori]
GO:0001942 P hair follicle development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0030216 P keratinocyte differentiation
GO:0035329 P hippo signaling
GO:0043065 P positive regulation of apoptotic process
GO:0045600 P positive regulation of fat cell differentiation
GO:0046620 P regulation of organ growth
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0050821 P protein stabilization
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060044 P negative regulation of cardiac muscle cell proliferation
GO:0060412 P ventricular septum morphogenesis
GO:0060487 P lung epithelial cell differentiation
GO:0060575 P intestinal epithelial cell differentiation
GO:2000036 P regulation of stem cell population maintenance
FPKM:3.03 TPM:3.27
1390 A_BomoOtmSK_comp10484_c0_seq2
2732bp
 scaffold_protein_salvador_[Bombyx_mori]
GO:0001942 P hair follicle development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0030216 P keratinocyte differentiation
GO:0035329 P hippo signaling
GO:0043065 P positive regulation of apoptotic process
GO:0045600 P positive regulation of fat cell differentiation
GO:0046620 P regulation of organ growth
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0050821 P protein stabilization
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060044 P negative regulation of cardiac muscle cell proliferation
GO:0060412 P ventricular septum morphogenesis
GO:0060487 P lung epithelial cell differentiation
GO:0060575 P intestinal epithelial cell differentiation
GO:2000036 P regulation of stem cell population maintenance
FPKM:0.21 TPM:0.22
1391 A_BomoOtmSK_comp10485_c0_seq1
1215bp
FPKM:2.30 TPM:2.48
1392 A_BomoOtmSK_comp1048664_c0_seq1
223bp
FPKM:0.90 TPM:0.97
1393 A_BomoOtmSK_comp1048669_c0_seq1
221bp
FPKM:0.93 TPM:1.00
1394 A_BomoOtmSK_comp1048695_c0_seq1
299bp
FPKM:0.36 TPM:0.39
1395 A_BomoOtmSK_comp1048696_c0_seq1
318bp
FPKM:0.63 TPM:0.68
1396 A_BomoOtmSK_comp10486_c0_seq1
1162bp
 ribosomal_RNA-processing_protein_8_[Bombyx_mori]
GO:0000183 P rDNA heterochromatin assembly
GO:0005634 C nucleus
GO:0005677 C chromatin silencing complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0008757 F S-adenosylmethionine-dependent methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0033553 C rDNA heterochromatin
GO:0035064 F methylated histone binding
GO:0042149 P cellular response to glucose starvation
GO:0044822 F RNA binding
GO:0046015 P regulation of transcription by glucose
GO:0071158 P regulation of cell cycle
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
FPKM:5.03 TPM:5.42
1397 A_BomoOtmSK_comp104873_c0_seq1
1223bp
FPKM:3.36 TPM:3.63
1398 A_BomoOtmSK_comp1048814_c0_seq1
204bp
FPKM:2.60 TPM:2.81
1399 A_BomoOtmSK_comp1048817_c0_seq1
218bp
FPKM:0.98 TPM:1.06
1400 A_BomoOtmSK_comp1048827_c0_seq1
280bp
FPKM:0.00 TPM:0.00
1401 A_BomoOtmSK_comp1048865_c0_seq1
252bp
FPKM:1.17 TPM:1.26
1402 A_BomoOtmSK_comp104886_c0_seq1
406bp
FPKM:2.12 TPM:2.28
1403 A_BomoOtmSK_comp10488_c0_seq1
902bp
 peroxidase_isoform_X2_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005506 F iron ion binding
GO:0005576 C extracellular region
GO:0006909 P phagocytosis
GO:0006979 P response to oxidative stress
GO:0007306 P eggshell chorion assembly
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0022008 P neurogenesis
GO:0042600 C egg chorion
GO:0042744 P hydrogen peroxide catabolic process
GO:0045471 P response to ethanol
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:2.28 TPM:2.46
1404 A_BomoOtmSK_comp1048930_c0_seq1
266bp
FPKM:0.50 TPM:0.54
1405 A_BomoOtmSK_comp1048985_c0_seq1
243bp
FPKM:1.98 TPM:2.13
1406 A_BomoOtmSK_comp10489_c0_seq1
1885bp
 roquin-1_isoform_X6_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
FPKM:0.79 TPM:0.86
1407 A_BomoOtmSK_comp10489_c0_seq2
3065bp
 roquin-1_isoform_X2_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
FPKM:4.21 TPM:4.54
1408 A_BomoOtmSK_comp1048_c0_seq1
373bp
FPKM:1.35 TPM:1.46
1409 A_BomoOtmSK_comp1049013_c0_seq1
218bp
FPKM:1.96 TPM:2.11
1410 A_BomoOtmSK_comp1049047_c0_seq1
203bp
FPKM:1.33 TPM:1.43
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