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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoOtmSK_comp10489_c0_seq2
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		roquin-1_isoform_X2_[Bombyx_mori]
Ontology
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
Transcript
Level		FPKM:4.21 TPM:4.54
ORF EntryO_BomoOtmSK5548_complete:A_BomoOtmSK_comp10489_c0_seq2
Sequence
(Nucleotide)
CCATATAAATATGTATTTAATAATACTGCGCGTTTCTGAATGTATAATACAATGGGACGT
CATGACTATAATACAACTATTATAATTTAATAGAATAAAACACTAAATTACATAAAATAC
GACCCGTTTAAAATTCATTAACTTAAAACAACGACCAGGCGTGCCCAATGGACGATCTCA
TTATTATCATATTTTTTATTAAAAAACTTTTGACAGTTATATCTTTTATACATTTAATTA
ATATAATTTCTCGATTGATCGATAGGGTATTAAATAACATGAAGCTTTGATGAAATGTAT
TGTTTTCGTTAATAGTGATTTTGTTTCGATTATCTATCCAAGAAGTACAAAGCCGTGAAC
AAAACGCAAAAGTAATGCACAGAGACAGACATTGAACGTATTCCGACGCCGGAGTCTAAT
CAGCGCTTTTGAATTCGGTGTCTATGCGACGCTCTAGAGCGAGTAGCTCCTCTTCGAGTT
GATCTTCTGCGCCGTCCGCGAAAAAGGACGGGTGAGGTGGAGGTACTCCACGCTCGGATC
CTACGACGCGTCTATCGGATGGGAAACGCCTGTCTAGAGGGGCCGAGCTGCGAGCGACAG
TTGGCAGAGCATCACGGATATTTTCGAAAGCGTATACATCGGTAACAGGCACCTGTGGGC
CGGGGGGCACTTGTTGTCCTTGAGACATCTGGGATATCGGGGGCATCGGCCCAACTGGCC
AGGTCACTTCGGTCCTCGGGACGTGATGCATCGAAGGATACTGCGGAGCCGGGATGTTCA
CGCGGATGTCGGATCGCAACTCAGAACGGATGTCGATCGGGGACTGGATTGGCGCTGCTC
CGTCTTCGAAGGGGTAGAGGTTAGAAGCCGTCGGCATGTACATTTGGTTGGATCCTTCCG
GCACCCCATACACCGAAGTCGGATACTCAGGGTGCTGATACTGCTGGGCGAAGTTAAAGT
TCGGATTGCCAGAGTTAAGATCGTAGATGCGACGCGGACCCGACGGCATATTTTGTTGAA
CGAAATTCGGATTTTGTTGCAGGTCAATCAGTTCGGGCATTTCCACAGAGGCAGCCTGCA
CGGGCCGTAATCCCTGTGGCTGCGATTGCAGTCCCTGGGGTTGCATCGATTGCGTTTGGA
TTCCTTGGGCTTGCATTGATTGTGGTTGGATACTCTGGGATTGCATCGATTGCGGTTGGA
CTCCTTGGGGTTGTATCGATTGTGACTGGATTCCCTGAGATTGCATCGATTGAGGTTGCA
TTCCTTGGGATTGCATAGATTGCAGTGTGGTTCCTTGGGGTTGCATCGATTGCGGTTGGA
TTCCCTGGGATTGCATTGATTGTGGTTGGATTCCTTGCGACTGCATCGATTGAGGCGGCA
TTCCCTGCATGGACTGGGCACCGAAAGCAGAGGGGTCGACGTGTTGTGGCATCGCGAATT
GATTATACATGTTGGGAATTATGTGTATTGGCTGACCAGGTAGGATCGGTGCCAAGCCAG
GTTGCATCGGCGTCAGTCCATGCTGGAGAGCGGGCACTCCTACTATCCCGGGCATGAACT
GAAAGTGTCCATTTATGTTTGCCATCATCGCTCGATATCTTTCTAGTTCCTCTTCAGAAT
GTGCATACATGCATGAATTTCCCCTCGGACACAATGATCTCAGAACATCCTTACACATAG
CCATCTTGTACCTCCCCTGGGTAGGTGTCGGTGTCGTACGGGCTTGCGGTGATGATTGAC
TAGTTGATGGTTCGTTTCGTAGATCCTTTTGCCCTTGGTTAGTGTCTTTTCCGGCCGCTT
GTTGCTGAATGTAATTAATCAGTCCGATCACAACCTCCTTTAATGACGTCATCACATCGG
CCATTTGCTTCCATGTTGGGCTTTTAGCATCGGCGTTGGCGTCGATGTTTGCGAGTTTGT
CGAGATGCATGCTCATTGTCACCAGTTGTTCCGGGTCTCCGGTACGTTGCAGCGCGACAA
ACAGCTCTTGGACCGATTGGGCAAATGACTGAGGCGTCTGTAATTTATCTATAATGCTCT
GCATGTGACTCTTATGCGCGGTGTCGCCATACAACAAAGCACTCCACTGATCGGGTGCGA
TTCTCAAACCTGATTCGGTGGCGATCTGAACTATCTGAGCGTCGTGTTCGCGCCTCAATG
AATCGTACGTACGGAATTCCTCCTTGAGTTGCATGAGCGACGAATCTGACTCCCTTTTCG
ATACCTTAAAACATGAGGCGCGGTACAGAAGCTGCACTACATGCCCGATGCTTGTTTTTG
AGGCCTGCGGAAAATGCGGCTCCAGTCTTTGAACCACAAACATCACTAGTACCTTTCGGG
AGAGAGCGGAACCGTCTTCGAGTGCGAGGAGTACCAATTTTAACACCTCTTCCTGCATAG
CAGGACCAAGGAATTGGCAACCACGCGCCCTCACTGCCGCCCATAAGTTGGCGCTTAGCT
GCTGCGGATTCTGATGTTGAAGAATGAGTTCAGTGACCGTCCGTTCGCCAAGAGACCTGG
CTGCCCGTGCGGCCCTGCCCCGGCCTTCCTCGTCTGTTATCGAACACTGCAGCAGCGTTA
CCAGCTTCCTCTGCATAGGCCTCGACAGTCGATTCCCGTTGCCACTCATATTGGCGTTTC
CGGAGCATTTCAAGAATACAGCAAGTTCCTCCATGGTGCGTATAACAGTGTCGTACGCCT
GCCTGTCCGACTCCGGGAGAGCCTTGATACAAGGCGGCTGATACGGCTGCGAAGGTGGCG
CATAGCCCGCCAGCTGAAGCAGCGCCGTGTTCACAACCAACTCCTCGGGTTCAACTTGTA
TGATCGTCTGGTCGAAGGGGCATTGTTTCCGATGAAGGTGAATCAGACAGTGCCTACAGA
GGGTGTGGCCGCAGCTGAGGCTGATAGGACTCCGGGGCGGAGCACCGAACTCTCGGCAGC
ACACCGGACAGGTTAGGTAGTCCGTCCACTGAGGCGCCTGAATTGGCATTCTTATAAATA
ACACGTACACTCATCACAAAAATAACACTTTATACTTCTATCCACTTCAAAACATGATCC
GTCAG
(3065 bp)

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