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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
661 A_BomoMSG_c10725_g1_i1
228bp
 arfaptin-2,_partial_[Bombyx_mori]
GO:0001726 C ruffle
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006928 P movement of cell or subcellular component
GO:0007264 P small GTPase mediated signal transduction
GO:0019904 F protein domain specific binding
GO:0030032 P lamellipodium assembly
GO:0030036 P actin cytoskeleton organization
GO:0030742 F GTP-dependent protein binding
GO:0031529 P ruffle organization
GO:0032588 C trans-Golgi network membrane
GO:0034315 P regulation of Arp2/3 complex-mediated actin nucleation
GO:0048365 F small GTPase binding
GO:0070273 F phosphatidylinositol-4-phosphate binding
FPKM:3.00 TPM:1.56
662 A_BomoMSG_c10726_g1_i1
371bp
 THAP_domain-containing_protein_9,_partial_[Camponotus_floridanus]
FPKM:1.55 TPM:0.81
663 A_BomoMSG_c10726_g1_i2
305bp
FPKM:2.81 TPM:1.46
664 A_BomoMSG_c10727_g1_i1
452bp
FPKM:3.77 TPM:1.96
665 A_BomoMSG_c10728_g1_i1
691bp
 phospholipase_D2_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003824 F catalytic activity
GO:0004630 F phospholipase D activity
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0006654 P phosphatidic acid biosynthetic process
GO:0016020 C membrane
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0030334 P regulation of cell migration
GO:0031902 C late endosome membrane
GO:0035091 F phosphatidylinositol binding
GO:0048017 P inositol lipid-mediated signaling
GO:0048471 C perinuclear region of cytoplasm
GO:0050764 P regulation of phagocytosis
GO:0070290 F N-acylphosphatidylethanolamine-specific phospholipase D activity
FPKM:2.88 TPM:1.50
666 A_BomoMSG_c10729_g1_i1
231bp
FPKM:10.15 TPM:5.28
667 A_BomoMSG_c10731_g1_i1
316bp
 PREDICTED:_uncharacterized_protein_LOC106719987_isoform_X3_[Papilio_machaon]
FPKM:2.89 TPM:1.50
668 A_BomoMSG_c10732_g1_i1
316bp
FPKM:5.42 TPM:2.82
669 A_BomoMSG_c10733_g1_i1
218bp
 putative_histone_H3_methyltransferase_[Danaus_plexippus_plexippus]
GO:0000781 C chromosome, telomeric region
GO:0005634 C nucleus
GO:0006342 P heterochromatin assembly
GO:0006348 P subtelomeric heterochromatin assembly
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0030702 P pericentric heterochromatin assembly
GO:0031151 F histone methyltransferase activity (H3-K79 specific)
GO:0032259 P methylation
GO:0034729 P histone H3-K79 methylation
GO:0035097 C histone methyltransferase complex
GO:0046331 P lateral inhibition
GO:0048096 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0051726 P regulation of cell cycle
GO:2000637 P positive regulation of gene silencing by miRNA
FPKM:9.35 TPM:4.86
670 A_BomoMSG_c10734_g1_i1
318bp
FPKM:4.99 TPM:2.60
671 A_BomoMSG_c10735_g1_i1
344bp
FPKM:3.09 TPM:1.61
672 A_BomoMSG_c10736_g1_i1
237bp
FPKM:1.42 TPM:0.74
673 A_BomoMSG_c10736_g1_i2
540bp
FPKM:21.03 TPM:10.94
674 A_BomoMSG_c10737_g1_i1
209bp
FPKM:1.93 TPM:1.00
675 A_BomoMSG_c10738_g1_i1
395bp
FPKM:2.20 TPM:1.15
676 A_BomoMSG_c10739_g1_i1
307bp
 vitellogenin_receptor_precursor_[Bombyx_mori]
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:1.36 TPM:0.71
677 A_BomoMSG_c10739_g1_i2
379bp
 vitellogenin_receptor_precursor_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021517 P ventral spinal cord development
FPKM:0.38 TPM:0.20
678 A_BomoMSG_c10740_g1_i1
1110bp
 39S_ribosomal_protein_L44,_mitochondrial_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0006396 P RNA processing
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0030529 C ribonucleoprotein complex
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:17.84 TPM:9.28
679 A_BomoMSG_c10741_g1_i1
789bp
 uncharacterized_protein_LOC101742695_[Bombyx_mori]
FPKM:1.97 TPM:1.02
680 A_BomoMSG_c10742_g1_i1
660bp
 WD_repeat-containing_protein_81_[Bombyx_mori]
FPKM:1.76 TPM:0.92
681 A_BomoMSG_c10743_g1_i1
1002bp
 zinc_finger_protein_616_[Bombyx_mori]
FPKM:3.09 TPM:1.61
682 A_BomoMSG_c10744_g1_i1
788bp
FPKM:2.82 TPM:1.46
683 A_BomoMSG_c10745_g1_i1
330bp
FPKM:5.33 TPM:2.77
684 A_BomoMSG_c10746_g1_i1
483bp
 PREDICTED:_kelch-like_protein_5_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
FPKM:2.70 TPM:1.40
685 A_BomoMSG_c10747_g1_i1
416bp
FPKM:4.73 TPM:2.46
686 A_BomoMSG_c10748_g1_i1
406bp
FPKM:1.64 TPM:0.85
687 A_BomoMSG_c10749_g1_i1
499bp
FPKM:4.12 TPM:2.14
688 A_BomoMSG_c10750_g1_i1
696bp
 uncharacterized_protein_LOC101740358_isoform_X2_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0001948 F protein binding
GO:0002576 P platelet degranulation
GO:0002687 P positive regulation of leukocyte migration
GO:0002691 P regulation of cellular extravasation
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006954 P inflammatory response
GO:0007155 P cell adhesion
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007159 P leukocyte cell-cell adhesion
GO:0008201 F heparin binding
GO:0009897 C external side of plasma membrane
GO:0010572 P positive regulation of platelet activation
GO:0014068 P positive regulation of phosphatidylinositol 3-kinase signaling
GO:0014070 P response to organic cyclic compound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016337 P cell-cell adhesion
GO:0030246 F carbohydrate binding
GO:0031088 C platelet dense granule membrane
GO:0031092 C platelet alpha granule membrane
GO:0032496 P response to lipopolysaccharide
GO:0033623 P regulation of integrin activation
GO:0033691 F sialic acid binding
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0042806 F fucose binding
GO:0043208 F glycosphingolipid binding
GO:0045785 P positive regulation of cell adhesion
GO:0048306 F calcium-dependent protein binding
GO:0050829 P defense response to Gram-negative bacterium
GO:0050900 P leukocyte migration
GO:0050901 P leukocyte tethering or rolling
GO:0070492 F oligosaccharide binding
FPKM:1.86 TPM:0.97
689 A_BomoMSG_c10752_g1_i1
216bp
FPKM:1.75 TPM:0.91
690 A_BomoMSG_c10754_g1_i1
370bp
 Bloom_syndrome_protein_homolog_isoform_X2_[Bombyx_mori]
FPKM:5.45 TPM:2.83
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