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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

511

A_BomoMSG_c10565_g1_i1

730bp

Bomo_Chr13

39S_ribosomal_protein_L22,_mitochondrial_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0003735	F	structural constituent of ribosome
GO:0005739	C	mitochondrion
GO:0005840	C	ribosome
GO:0006412	P	translation
GO:0008150	P	biological_process
GO:0015934	C	large ribosomal subunit
GO:0030529	C	ribonucleoprotein complex

FPKM:61.43 TPM:31.96

512

A_BomoMSG_c10566_g1_i1

258bp

Bomo_Chr7

DE-cadherin_isoform_X4_[Bombyx_mori]

GO:0000902	P	cell morphogenesis
GO:0001738	P	morphogenesis of a polarized epithelium
GO:0001745	P	compound eye morphogenesis
GO:0001748	P	insect visual primordium development
GO:0002009	P	morphogenesis of an epithelium
GO:0003151	P	outflow tract morphogenesis
GO:0004872	F	signaling receptor activity
GO:0005509	F	calcium ion binding
GO:0005515	F	protein binding
GO:0005886	C	plasma membrane
GO:0005887	C	integral component of plasma membrane
GO:0005912	C	adherens junction
GO:0005913	C	adherens junction
GO:0005914	C	spot adherens junction
GO:0005915	C	zonula adherens
GO:0005938	C	cell cortex
GO:0007155	P	cell adhesion
GO:0007156	P	homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007163	P	establishment or maintenance of cell polarity
GO:0007280	P	pole cell migration
GO:0007281	P	germ cell development
GO:0007297	P	ovarian follicle cell migration
GO:0007298	P	border follicle cell migration
GO:0007314	P	oocyte anterior/posterior axis specification
GO:0007370	P	ventral furrow formation
GO:0007379	P	segment specification
GO:0007399	P	nervous system development
GO:0007409	P	axonogenesis
GO:0007411	P	axon guidance
GO:0007420	P	brain development
GO:0007424	P	open tracheal system development
GO:0007435	P	salivary gland morphogenesis
GO:0007506	P	gonadal mesoderm development
GO:0007507	P	heart development
GO:0008013	F	beta-catenin binding
GO:0008105	P	protein localization
GO:0008258	P	head involution
GO:0008354	P	germ cell migration
GO:0008356	P	asymmetric cell division
GO:0008406	P	gonad development
GO:0010004	P	gastrulation involving germ band extension
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016318	P	ommatidial rotation
GO:0016337	P	cell-cell adhesion
GO:0016339	P	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016342	C	catenin complex
GO:0017022	F	myosin binding
GO:0030031	P	cell projection assembly
GO:0030175	C	filopodium
GO:0030708	P	germarium-derived female germ-line cyst encapsulation
GO:0030720	P	oocyte localization involved in germarium-derived egg chamber formation
GO:0035019	P	somatic stem cell population maintenance
GO:0035099	P	hemocyte migration
GO:0035147	P	branch fusion, open tracheal system
GO:0035160	P	maintenance of epithelial integrity, open tracheal system
GO:0035212	P	cell competition in a multicellular organism
GO:0035262	P	gonad morphogenesis
GO:0036099	P	female germ-line stem cell population maintenance
GO:0042060	P	wound healing
GO:0042078	P	germ-line stem cell division
GO:0042803	F	protein homodimerization activity
GO:0043296	C	apical junction complex
GO:0044331	P	cell-cell adhesion mediated by cadherin
GO:0045176	P	apical protein localization
GO:0045186	P	zonula adherens assembly
GO:0046872	F	metal ion binding
GO:0048103	P	somatic stem cell division
GO:0048477	P	oogenesis
GO:0050832	P	defense response to fungus
GO:0050839	F	cell adhesion molecule binding
GO:0055037	C	recycling endosome
GO:0071907	P	determination of digestive tract left/right asymmetry
GO:0098730	P	male germline stem cell symmetric division

FPKM:3.86 TPM:2.01

513

A_BomoMSG_c10568_g1_i1

227bp

Putative_uncharacterized_protein,_partial_[Pararhodospirillum_photometricum_DSM_122]

FPKM:4.56 TPM:2.37

514

A_BomoMSG_c1056_g1_i1

236bp

Bomo_Chr10

LOW_QUALITY_PROTEIN:_protein_tiptop_[Bombyx_mori]

FPKM:0.00 TPM:0.00

515

A_BomoMSG_c1056_g1_i2

288bp

Bomo_Chr10

LOW_QUALITY_PROTEIN:_protein_tiptop_[Bombyx_mori]

FPKM:3.04 TPM:1.58

516

A_BomoMSG_c10570_g1_i1

315bp

Bomo_Chr14

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

GO:0003964	F	RNA-directed DNA polymerase activity
GO:0006278	P	RNA-dependent DNA biosynthetic process
GO:0008152	P	metabolic process
GO:0016740	F	transferase activity
GO:0016779	F	nucleotidyltransferase activity

FPKM:2.54 TPM:1.32

517

A_BomoMSG_c10571_g1_i1

222bp

Bomo_Chr1

FPKM:4.04 TPM:2.10

518

A_BomoMSG_c10572_g1_i1

229bp

Bomo_Chr11

FPKM:1.48 TPM:0.77

519

A_BomoMSG_c10573_g1_i1

669bp

Bomo_Chr10

leucine-rich_repeats_and_immunoglobulin-like_domains_protein_3_[Bombyx_mori]

GO:0005615	C	extracellular space
GO:0005886	C	plasma membrane
GO:0007275	P	multicellular organism development
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0030659	C	cytoplasmic vesicle membrane
GO:0031410	C	cytoplasmic vesicle
GO:0032474	P	otolith morphogenesis

FPKM:2.06 TPM:1.07

520

A_BomoMSG_c10573_g1_i2

232bp

Bomo_Chr10

leucine-rich_repeats_and_immunoglobulin-like_domains_protein_3_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0005737	C	cytoplasm
GO:0005886	C	plasma membrane
GO:0007605	P	sensory perception of sound
GO:0010640	P	regulation of platelet-derived growth factor receptor signaling pathway
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0060384	P	innervation

FPKM:5.13 TPM:2.67

521

A_BomoMSG_c10574_g1_i1

268bp

Bomo_Chr1

FPKM:4.05 TPM:2.11

522

A_BomoMSG_c10575_g1_i1

382bp

Bomo_Chr17

extracellular_serine/threonine_protein_CG31145_isoform_X1_[Bombyx_mori]

GO:0000139	C	Golgi membrane
GO:0000166	F	nucleotide binding
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005576	C	extracellular region
GO:0005794	C	Golgi apparatus
GO:0006468	P	protein phosphorylation
GO:0007476	P	imaginal disc-derived wing morphogenesis
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0046872	F	metal ion binding

FPKM:1.26 TPM:0.66

523

A_BomoMSG_c10575_g1_i2

365bp

Bomo_Chr17

extracellular_serine/threonine_protein_CG31145_isoform_X2_[Bombyx_mori]

GO:0000139	C	Golgi membrane
GO:0000166	F	nucleotide binding
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005576	C	extracellular region
GO:0005794	C	Golgi apparatus
GO:0006468	P	protein phosphorylation
GO:0007476	P	imaginal disc-derived wing morphogenesis
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0046872	F	metal ion binding

FPKM:1.43 TPM:0.74

524

A_BomoMSG_c10577_g1_i1

609bp

Bomo_Chr1

FPKM:2.61 TPM:1.36

525

A_BomoMSG_c10578_g1_i1

348bp

Bomo_Chr13

FPKM:3.03 TPM:1.58

526

A_BomoMSG_c10580_g1_i1

458bp

Bomo_Chr19

FPKM:4.67 TPM:2.43

527

A_BomoMSG_c10581_g1_i1

795bp

Bomo_Chr21

FPKM:4.83 TPM:2.51

528

A_BomoMSG_c10582_g1_i1

401bp

Bomo_Chr8

FPKM:1.43 TPM:0.75

529

A_BomoMSG_c10584_g1_i1

240bp

Bomo_Chr4

FPKM:1.31 TPM:0.68

530

A_BomoMSG_c10586_g1_i1

355bp

Bomo_Chr23

major_facilitator_superfamily_domain-containing_protein_8_isoform_X2_[Bombyx_mori]

GO:0005764	C	lysosome
GO:0005765	C	lysosomal membrane
GO:0006810	P	transport
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0055085	P	transmembrane transport

FPKM:4.68 TPM:2.43

531

A_BomoMSG_c10587_g1_i1

957bp

Bomo_Scaf124

histone_H2A-like_protein_2_[Bombyx_mori]

GO:0000786	C	nucleosome
GO:0003677	F	DNA binding
GO:0005634	C	nucleus
GO:0005694	C	chromosome
GO:0046982	F	protein heterodimerization activity

FPKM:34.13 TPM:17.76

532

A_BomoMSG_c1058_g1_i1

217bp

Bomo_Chr1

FPKM:5.17 TPM:2.69

533

A_BomoMSG_c10590_g1_i1

216bp

Bomo_Chr22

ras-related_GTP_binding_protein_[Bombyx_mori]

GO:0000082	P	G1/S transition of mitotic cell cycle
GO:0000139	C	Golgi membrane
GO:0000166	F	nucleotide binding
GO:0003924	F	GTPase activity
GO:0005525	F	GTP binding
GO:0005575	C	cellular_component
GO:0005622	C	intracellular anatomical structure
GO:0005737	C	cytoplasm
GO:0005783	C	endoplasmic reticulum
GO:0005789	C	endoplasmic reticulum membrane
GO:0005794	C	Golgi apparatus
GO:0005829	C	cytosol
GO:0005975	P	carbohydrate metabolic process
GO:0006629	P	lipid metabolic process
GO:0007165	P	signal transduction
GO:0007264	P	small GTPase mediated signal transduction
GO:0007411	P	axon guidance
GO:0007430	P	terminal branching, open tracheal system
GO:0007446	P	imaginal disc growth
GO:0010506	P	regulation of autophagy
GO:0010507	P	negative regulation of autophagy
GO:0012505	C	endomembrane system
GO:0015031	P	protein transport
GO:0016020	C	membrane
GO:0016049	P	cell growth
GO:0030307	P	positive regulation of cell growth
GO:0032008	P	positive regulation of TOR signaling
GO:0035264	P	multicellular organism growth
GO:0042254	P	ribosome biogenesis
GO:0042331	P	phototaxis
GO:0042594	P	response to starvation
GO:0045176	P	apical protein localization
GO:0045727	P	positive regulation of translation
GO:0045793	P	positive regulation of cell size
GO:0046872	F	metal ion binding
GO:0051124	P	synaptic assembly at neuromuscular junction
GO:0090070	P	positive regulation of ribosome biogenesis
GO:2000377	P	regulation of reactive oxygen species metabolic process

FPKM:7.86 TPM:4.09

534

A_BomoMSG_c10591_g1_i1

202bp

Bomo_Chr22

FPKM:2.14 TPM:1.11

535

A_BomoMSG_c10593_g1_i1

591bp

Bomo_Chr4

E3_ubiquitin-protein_ligase_MIB1_[Bombyx_mori]

GO:0000209	P	protein polyubiquitination
GO:0004842	F	ubiquitin-protein transferase activity
GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0005829	C	cytosol
GO:0005938	C	cell cortex
GO:0006897	P	endocytosis
GO:0007219	P	Notch signaling pathway
GO:0007423	P	sensory organ development
GO:0008104	P	protein localization
GO:0008270	F	zinc ion binding
GO:0008587	P	imaginal disc-derived wing margin morphogenesis
GO:0008593	P	regulation of Notch signaling pathway
GO:0016567	P	protein ubiquitination
GO:0016874	F	ligase activity
GO:0045179	C	apical cortex
GO:0045747	P	positive regulation of Notch signaling pathway
GO:0045807	P	positive regulation of endocytosis
GO:0046331	P	lateral inhibition
GO:0046872	F	metal ion binding
GO:0048749	P	compound eye development
GO:0061630	F	ubiquitin protein ligase activity

FPKM:5.43 TPM:2.83

536

A_BomoMSG_c10598_g1_i1

264bp

Bomo_Chr27

FPKM:8.89 TPM:4.63

537

A_BomoMSG_c10599_g1_i1

309bp

Bomo_Chr24

FPKM:4.52 TPM:2.35

538

A_BomoMSG_c105_g1_i1

341bp

Bomo_Chr14

DNA_topoisomerase_3-beta-1_[Bombyx_mori]

GO:0000737	P	DNA catabolic process, endonucleolytic
GO:0003677	F	DNA binding
GO:0003916	F	DNA topoisomerase activity
GO:0003917	F	DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0004520	F	endodeoxyribonuclease activity
GO:0006265	P	DNA topological change
GO:0016853	F	isomerase activity
GO:0051965	P	positive regulation of synapse assembly