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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4291 A_BomoMSG_c14591_g1_i1
442bp
 putative_sodium-dependent_multivitamin_transporter_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:4.52 TPM:2.35
4292 A_BomoMSG_c14594_g1_i1
222bp
 E3_ubiquitin-protein_ligase_ZNF598_isoform_X1_[Bombyx_mori]
FPKM:4.04 TPM:2.10
4293 A_BomoMSG_c14596_g1_i1
242bp
FPKM:3.22 TPM:1.67
4294 A_BomoMSG_c14597_g1_i1
654bp
 glucose-fructose_oxidoreductase_domain-containing_protein_1_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.90 TPM:0.99
4295 A_BomoMSG_c14598_g1_i1
324bp
FPKM:3.44 TPM:1.79
4296 A_BomoMSG_c14599_g1_i1
323bp
 phosphofurin_acidic_cluster_sorting_protein_1_isoform_X4_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006915 P apoptotic process
GO:0034497 P protein localization to phagophore assembly site
GO:0044325 F transmembrane transporter binding
GO:0072661 P protein localization to plasma membrane
FPKM:3.46 TPM:1.80
4297 A_BomoMSG_c145_g1_i1
207bp
FPKM:7.93 TPM:4.13
4298 A_BomoMSG_c14601_g1_i1
428bp
FPKM:3.02 TPM:1.57
4299 A_BomoMSG_c14602_g1_i1
319bp
FPKM:3.55 TPM:1.84
4300 A_BomoMSG_c14605_g1_i1
551bp
 uncharacterized_protein_LOC101737775_isoform_X1_[Bombyx_mori]
FPKM:1.20 TPM:0.62
4301 A_BomoMSG_c14606_g1_i1
294bp
FPKM:3.33 TPM:1.73
4302 A_BomoMSG_c14606_g2_i1
366bp
FPKM:1.39 TPM:0.72
4303 A_BomoMSG_c14607_g1_i1
674bp
 uncharacterized_protein_LOC101745635_[Bombyx_mori]
GO:0004124 F cysteine synthase activity
GO:0005737 C cytoplasm
GO:0006535 P cysteine biosynthetic process from serine
GO:0008652 P cellular amino acid biosynthetic process
GO:0016740 F transferase activity
GO:0019344 P cysteine biosynthetic process
FPKM:2.63 TPM:1.37
4304 A_BomoMSG_c14607_g1_i2
398bp
 uncharacterized_protein_LOC101745635_[Bombyx_mori]
GO:0004124 F cysteine synthase activity
GO:0005737 C cytoplasm
GO:0006535 P cysteine biosynthetic process from serine
GO:0008652 P cellular amino acid biosynthetic process
GO:0016740 F transferase activity
GO:0016829 F lyase activity
GO:0019344 P cysteine biosynthetic process
GO:0030170 F pyridoxal phosphate binding
GO:0050017 F L-3-cyanoalanine synthase activity
FPKM:0.00 TPM:0.00
4305 A_BomoMSG_c14608_g1_i1
203bp
FPKM:9.49 TPM:4.93
4306 A_BomoMSG_c14609_g1_i1
263bp
FPKM:2.64 TPM:1.38
4307 A_BomoMSG_c1460_g1_i1
231bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.45 TPM:0.75
4308 A_BomoMSG_c14611_g1_i1
476bp
FPKM:2.94 TPM:1.53
4309 A_BomoMSG_c14613_g1_i1
415bp
 LOW_QUALITY_PROTEIN:_pre-mRNA-processing_factor_6_[Bombyx_mori]
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006403 P RNA localization
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0043021 F ribonucleoprotein complex binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0050681 F androgen receptor binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.04 TPM:1.06
4310 A_BomoMSG_c14614_g1_i1
283bp
 telomere-associated_protein_RIF1_[Bombyx_mori]
FPKM:3.60 TPM:1.87
4311 A_BomoMSG_c14616_g1_i1
282bp
FPKM:2.72 TPM:1.41
4312 A_BomoMSG_c14617_g1_i1
447bp
FPKM:3.03 TPM:1.57
4313 A_BomoMSG_c14618_g1_i1
326bp
FPKM:5.45 TPM:2.83
4314 A_BomoMSG_c1461_g1_i1
453bp
 carboxylesterase_CarE-5,_partial_[Bombyx_mandarina]
FPKM:2.18 TPM:1.13
4315 A_BomoMSG_c14620_g1_i1
205bp
FPKM:5.11 TPM:2.66
4316 A_BomoMSG_c14621_g1_i1
383bp
 E3_ubiquitin-protein_ligase_TM129_isoform_X3_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006986 P response to unfolded protein
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030970 P retrograde protein transport, ER to cytosol
GO:0046872 F metal ion binding
GO:1904264 F ubiquitin protein ligase activity
FPKM:3.34 TPM:1.74
4317 A_BomoMSG_c14622_g1_i1
393bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.73 TPM:0.90
4318 A_BomoMSG_c14623_g1_i1
253bp
 uncharacterized_protein_LOC101740358_isoform_X1_[Bombyx_mori]
FPKM:2.31 TPM:1.20
4319 A_BomoMSG_c14624_g1_i1
204bp
 G_protein_alpha_subunit_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001664 F G protein-coupled receptor binding
GO:0003384 P apical constriction involved in gastrulation
GO:0003924 F GTPase activity
GO:0004871 F obsolete signal transducer activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005834 C heterotrimeric G-protein complex
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007188 P adenylate cyclase-modulating G protein-coupled receptor signaling pathway
GO:0007264 P small GTPase mediated signal transduction
GO:0007266 P Rho protein signal transduction
GO:0007275 P multicellular organism development
GO:0007369 P gastrulation
GO:0007370 P ventral furrow formation
GO:0007374 P posterior midgut invagination
GO:0008152 P metabolic process
GO:0008360 P regulation of cell shape
GO:0010004 P gastrulation involving germ band extension
GO:0016476 P regulation of embryonic cell shape
GO:0019001 F guanyl nucleotide binding
GO:0031526 C brush border membrane
GO:0031683 F G-protein beta/gamma-subunit complex binding
GO:0031752 F D5 dopamine receptor binding
GO:0046872 F metal ion binding
GO:0070252 P actin-mediated cell contraction
FPKM:7.26 TPM:3.78
4320 A_BomoMSG_c14625_g1_i1
244bp
 odorant_binding_protein_LOC100301497_precursor_[Bombyx_mori]
FPKM:7.56 TPM:3.93
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