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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3151 A_BomoMSG_c13477_g1_i1
208bp
FPKM:52.74 TPM:27.44
3152 A_BomoMSG_c13477_g1_i2
222bp
FPKM:100.12 TPM:52.08
3153 A_BomoMSG_c13478_g1_i1
2919bp
 silk_gland_factor_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0019904 F protein domain specific binding
GO:0043565 F sequence-specific DNA binding
FPKM:42.31 TPM:22.01
3154 A_BomoMSG_c13479_g1_i1
472bp
FPKM:6.70 TPM:3.49
3155 A_BomoMSG_c1347_g1_i1
223bp
 otoferlin-like_isoform_X5_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0010996 P response to auditory stimulus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016323 C basolateral plasma membrane
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0050885 P neuromuscular process controlling balance
FPKM:3.99 TPM:2.07
3156 A_BomoMSG_c13480_g1_i1
446bp
FPKM:3.24 TPM:1.69
3157 A_BomoMSG_c13482_g1_i1
292bp
 WEB_family_protein_At4g27595,_chloroplastic_isoform_X2_[Bombyx_mori]
FPKM:2.11 TPM:1.10
3158 A_BomoMSG_c13483_g1_i1
422bp
 cysteine-rich_PDZ-binding_protein_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0008017 F microtubule binding
GO:0014069 C postsynaptic density
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0030425 C dendrite
GO:0031122 P cytoplasmic microtubule organization
GO:0032403 F protein-containing complex binding
GO:0035372 P protein localization to microtubule
GO:0042995 C cell projection
GO:0043025 C neuronal cell body
GO:0043197 C dendritic spine
GO:0043198 C dendritic shaft
GO:0045184 P establishment of protein localization
GO:0045202 C synapse
GO:0097110 F scaffold protein binding
GO:1902897 P regulation of postsynaptic density protein 95 clustering
FPKM:6.39 TPM:3.32
3159 A_BomoMSG_c13484_g1_i1
963bp
 S1_RNA-binding_domain-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0006139 P nucleobase-containing compound metabolic process
FPKM:3.39 TPM:1.76
3160 A_BomoMSG_c13485_g1_i1
409bp
FPKM:4.40 TPM:2.29
3161 A_BomoMSG_c13486_g1_i1
630bp
 heme_transporter_hrg1-B-like_isoform_X2_[Helicoverpa_armigera]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0006810 P transport
GO:0010008 C endosome membrane
GO:0015232 F heme transmembrane transporter activity
GO:0015886 P heme transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0048821 P erythrocyte development
FPKM:29.95 TPM:15.58
3162 A_BomoMSG_c13487_g1_i1
249bp
 uncharacterized_protein_LOC101741223_[Bombyx_mori]
FPKM:2.40 TPM:1.25
3163 A_BomoMSG_c13487_g2_i1
224bp
 uncharacterized_protein_LOC101741223_[Bombyx_mori]
FPKM:3.15 TPM:1.64
3164 A_BomoMSG_c13488_g1_i1
541bp
FPKM:3.22 TPM:1.67
3165 A_BomoMSG_c13489_g1_i1
1497bp
 copper_transporter_[Bombyx_mori]
GO:0005375 F copper ion transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006825 P copper ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035434 P copper ion transmembrane transport
FPKM:25.80 TPM:13.42
3166 A_BomoMSG_c1348_g1_i1
237bp
FPKM:4.75 TPM:2.47
3167 A_BomoMSG_c13490_g1_i1
574bp
 uncharacterized_protein_LOC101738636_[Bombyx_mori]
FPKM:1.84 TPM:0.96
3168 A_BomoMSG_c13491_g1_i1
459bp
FPKM:4.27 TPM:2.22
3169 A_BomoMSG_c13492_g1_i1
474bp
FPKM:1.85 TPM:0.96
3170 A_BomoMSG_c13493_g1_i1
238bp
FPKM:0.00 TPM:0.00
3171 A_BomoMSG_c13494_g1_i1
212bp
 uncharacterized_protein_LOC101746464_isoform_X3_[Bombyx_mori]
FPKM:1.84 TPM:0.96
3172 A_BomoMSG_c13494_g2_i1
687bp
 uncharacterized_protein_LOC101746464_isoform_X3_[Bombyx_mori]
FPKM:1.78 TPM:0.93
3173 A_BomoMSG_c13495_g1_i1
1030bp
 28S_ribosomal_protein_S18a,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
FPKM:34.09 TPM:17.73
3174 A_BomoMSG_c13495_g1_i2
697bp
 28S_ribosomal_protein_S18a,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
FPKM:0.00 TPM:0.00
3175 A_BomoMSG_c13497_g1_i1
663bp
 uncharacterized_protein_LOC101744738_[Bombyx_mori]
FPKM:3.88 TPM:2.02
3176 A_BomoMSG_c13498_g1_i1
2569bp
 myosin_heavy_chain,_clone_203_isoform_X2_[Bombyx_mori]
FPKM:8.66 TPM:4.51
3177 A_BomoMSG_c13498_g1_i2
2606bp
 myosin_heavy_chain,_clone_203_isoform_X1_[Bombyx_mori]
FPKM:20.21 TPM:10.51
3178 A_BomoMSG_c13498_g1_i3
2662bp
 myosin_heavy_chain,_clone_203_isoform_X1_[Bombyx_mori]
FPKM:16.65 TPM:8.66
3179 A_BomoMSG_c1349_g1_i1
356bp
 LOW_QUALITY_PROTEIN:_spectrin_beta_chain,_non-erythrocytic_2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0008091 C spectrin
GO:0019905 F syntaxin binding
GO:0030507 F spectrin binding
GO:0031532 P actin cytoskeleton reorganization
GO:0032403 F protein-containing complex binding
GO:0043234 C protein-containing complex
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0051693 P actin filament capping
FPKM:2.33 TPM:1.21
3180 A_BomoMSG_c134_g1_i1
2186bp
 heat_shock_cognate_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
FPKM:2598.39 TPM:1351.73
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