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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2791 A_BomoMSG_c13076_g1_i1
262bp
 translation_initiation_factor_IF-2,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003743 F translation initiation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0008135 F translation factor activity, RNA binding
GO:0032790 P ribosome disassembly
GO:0043024 F ribosomal small subunit binding
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
FPKM:3.73 TPM:1.94
2792 A_BomoMSG_c13077_g1_i1
219bp
 PREDICTED:_tyrosine-protein_phosphatase_Lar-like_[Amyelois_transitella]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0006470 P protein dephosphorylation
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
FPKM:4.19 TPM:2.18
2793 A_BomoMSG_c13079_g1_i1
224bp
FPKM:4.73 TPM:2.46
2794 A_BomoMSG_c13081_g1_i1
340bp
FPKM:8.52 TPM:4.43
2795 A_BomoMSG_c13082_g1_i1
305bp
FPKM:1.93 TPM:1.01
2796 A_BomoMSG_c13083_g1_i1
204bp
FPKM:0.00 TPM:0.00
2797 A_BomoMSG_c13084_g1_i1
660bp
FPKM:3.76 TPM:1.96
2798 A_BomoMSG_c13085_g1_i1
321bp
hypothetical_protein_AK972_0975_[Pseudomonas_fluorescens]
FPKM:16.47 TPM:8.57
2799 A_BomoMSG_c13086_g1_i1
415bp
 glycogen_debranching_enzyme_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004134 F 4-alpha-glucanotransferase activity
GO:0004135 F amylo-alpha-1,6-glucosidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0005978 P glycogen biosynthetic process
GO:0005980 P glycogen catabolic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
FPKM:3.17 TPM:1.65
2800 A_BomoMSG_c13087_g1_i1
501bp
FPKM:3.24 TPM:1.69
2801 A_BomoMSG_c13088_g1_i1
222bp
FPKM:35.52 TPM:18.48
2802 A_BomoMSG_c13089_g1_i1
358bp
FPKM:8.36 TPM:4.35
2803 A_BomoMSG_c13090_g1_i1
531bp
 polypeptide_N-acetylgalactosaminyltransferase_10_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006486 P protein glycosylation
GO:0009312 P oligosaccharide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
FPKM:3.62 TPM:1.88
2804 A_BomoMSG_c13090_g2_i1
420bp
 polypeptide_N-acetylgalactosaminyltransferase_10_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
FPKM:2.49 TPM:1.30
2805 A_BomoMSG_c13090_g2_i2
280bp
 polypeptide_N-acetylgalactosaminyltransferase_10_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0003674 F molecular_function
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005575 C cellular_component
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
FPKM:1.74 TPM:0.90
2806 A_BomoMSG_c13091_g1_i1
263bp
FPKM:5.80 TPM:3.02
2807 A_BomoMSG_c13092_g1_i1
330bp
 ATP-binding_cassette_sub-family_G_member_1-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005543 F phospholipid binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009720 P detection of hormone stimulus
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010887 P negative regulation of cholesterol storage
GO:0010888 P negative regulation of lipid storage
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042157 P lipoprotein metabolic process
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0055037 C recycling endosome
GO:0055085 P transmembrane transport
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
FPKM:4.66 TPM:2.43
2808 A_BomoMSG_c13093_g1_i1
368bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744024_[Bombyx_mori]
FPKM:5.50 TPM:2.86
2809 A_BomoMSG_c13094_g1_i1
412bp
FPKM:2.52 TPM:1.31
2810 A_BomoMSG_c13095_g1_i1
732bp
 synaptic_vesicle_glycoprotein_2A_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005315 F inorganic phosphate transmembrane transporter activity
GO:0005384 F manganese ion transmembrane transporter activity
GO:0005887 C integral component of plasma membrane
GO:0006797 P polyphosphate metabolic process
GO:0006810 P transport
GO:0006817 P phosphate ion transport
GO:0006828 P manganese ion transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0071421 P manganese ion transmembrane transport
GO:0097079 F selenite:proton symporter activity
GO:0097080 P plasma membrane selenite transport
FPKM:1.85 TPM:0.96
2811 A_BomoMSG_c13097_g1_i1
311bp
FPKM:2.61 TPM:1.36
2812 A_BomoMSG_c13098_g1_i1
288bp
FPKM:2.60 TPM:1.35
2813 A_BomoMSG_c13098_g2_i1
235bp
FPKM:1.39 TPM:0.72
2814 A_BomoMSG_c13099_g1_i1
521bp
 4-coumarate--CoA_ligase_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001676 P long-chain fatty acid metabolic process
GO:0003824 F catalytic activity
GO:0004467 F long-chain fatty acid-CoA ligase activity
GO:0005524 F ATP binding
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016874 F ligase activity
FPKM:2.26 TPM:1.18
2815 A_BomoMSG_c13100_g1_i1
281bp
FPKM:2.74 TPM:1.42
2816 A_BomoMSG_c13101_g1_i1
383bp
FPKM:8.75 TPM:4.55
2817 A_BomoMSG_c13102_g1_i1
1035bp
 syntaxin_isoform_X1_[Bombyx_mori]
GO:0000045 P autophagosome assembly
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0000407 C phagophore assembly site
GO:0005484 F SNAP receptor activity
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006906 P vesicle fusion
GO:0010008 C endosome membrane
GO:0012505 C endomembrane system
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0031083 C BLOC-1 complex
GO:0031201 C SNARE complex
GO:0031982 C vesicle
GO:0033344 P cholesterol efflux
GO:0045121 C membrane raft
GO:0045335 C phagocytic vesicle
GO:0048278 P vesicle docking
GO:0050821 P protein stabilization
GO:0070062 C extracellular exosome
FPKM:17.93 TPM:9.33
2818 A_BomoMSG_c13104_g1_i1
362bp
 uncharacterized_protein_LOC110386273_[Bombyx_mori]
FPKM:3.39 TPM:1.77
2819 A_BomoMSG_c13106_g1_i1
370bp
FPKM:1.91 TPM:0.99
2820 A_BomoMSG_c13109_g1_i1
291bp
FPKM:5.52 TPM:2.87
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