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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2131 A_BomoMSG_c12350_g1_i1
439bp
 cytochrome_P450,_partial_[Bombyx_mori]
FPKM:2.70 TPM:1.40
2132 A_BomoMSG_c12354_g1_i1
349bp
 vacuolar_protein_sorting-associated_protein_11_homolog_[Bombyx_mori]
FPKM:1.20 TPM:0.63
2133 A_BomoMSG_c12355_g1_i1
307bp
 reverse_transcriptase,_partial_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2134 A_BomoMSG_c12355_g1_i2
483bp
 reverse_transcriptase,_partial_[Bombyx_mori]
FPKM:2.16 TPM:1.12
2135 A_BomoMSG_c12356_g1_i1
369bp
FPKM:3.56 TPM:1.85
2136 A_BomoMSG_c12357_g1_i1
846bp
 probable_RNA_methyltransferase_bin3_[Bombyx_mori]
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0017069 F snRNA binding
GO:0017148 P negative regulation of translation
GO:0032259 P methylation
GO:0032502 P developmental process
GO:0042048 P olfactory behavior
FPKM:2.93 TPM:1.52
2137 A_BomoMSG_c12358_g1_i1
419bp
FPKM:1.11 TPM:0.58
2138 A_BomoMSG_c12359_g1_i1
1182bp
 myosin_light_polypeptide_9_isoform_B_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0001736 P establishment of planar polarity
GO:0003384 P apical constriction involved in gastrulation
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0005938 C cell cortex
GO:0007298 P border follicle cell migration
GO:0007300 P ovarian nurse cell to oocyte transport
GO:0016324 C apical plasma membrane
GO:0016459 C myosin complex
GO:0016460 C myosin II complex
GO:0019749 P cytoskeleton-dependent cytoplasmic transport, nurse cell to oocyte
GO:0022008 P neurogenesis
GO:0030048 P actin filament-based movement
GO:0030496 C midbody
GO:0030707 P ovarian follicle cell development
GO:0031036 P myosin II filament assembly
GO:0031941 C filamentous actin
GO:0032036 F myosin heavy chain binding
GO:0032154 C cleavage furrow
GO:0032956 P regulation of actin cytoskeleton organization
GO:0035148 P tube formation
GO:0035159 P regulation of tube length, open tracheal system
GO:0035183 C female germline ring canal inner rim
GO:0035191 P nuclear axial expansion
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035317 P imaginal disc-derived wing hair organization
GO:0042060 P wound healing
GO:0045177 C apical part of cell
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051233 C spindle midzone
GO:0060288 P formation of a compartment boundary
GO:0090254 P cell elongation involved in imaginal disc-derived wing morphogenesis
FPKM:227.13 TPM:118.16
2139 A_BomoMSG_c12360_g1_i1
1384bp
 C-terminal-binding_protein_isoform_X1_[Bombyx_mori]
FPKM:64.08 TPM:33.34
2140 A_BomoMSG_c12361_g1_i1
304bp
 uncharacterized_protein_LOC105842810_isoform_X2_[Bombyx_mori]
FPKM:0.78 TPM:0.40
2141 A_BomoMSG_c12362_g1_i1
1640bp
 methionine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004825 F methionine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006431 P methionyl-tRNA aminoacylation
GO:0016874 F ligase activity
FPKM:28.77 TPM:14.97
2142 A_BomoMSG_c12363_g1_i1
1471bp
 glutathione_S-transferase_sigma_2_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0008152 P metabolic process
GO:0016740 F transferase activity
FPKM:32.68 TPM:17.00
2143 A_BomoMSG_c12364_g1_i1
907bp
FPKM:18.15 TPM:9.44
2144 A_BomoMSG_c12365_g1_i1
2108bp
 ornithine_aminotransferase,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004587 F ornithine-oxo-acid transaminase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006591 P ornithine metabolic process
GO:0008483 F transaminase activity
GO:0010121 P arginine catabolic process to proline via ornithine
GO:0016740 F transferase activity
GO:0019544 P arginine catabolic process to glutamate
GO:0022008 P neurogenesis
GO:0030170 F pyridoxal phosphate binding
GO:0042802 F identical protein binding
GO:0055129 P L-proline biosynthetic process
FPKM:114.84 TPM:59.74
2145 A_BomoMSG_c12366_g1_i1
280bp
FPKM:5.06 TPM:2.63
2146 A_BomoMSG_c12367_g1_i1
661bp
FPKM:4.81 TPM:2.50
2147 A_BomoMSG_c12369_g1_i1
1860bp
 farnesoic_acid_O-methyltransferase_[Bombyx_mori]
GO:0004866 F endopeptidase inhibitor activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0030414 F peptidase inhibitor activity
FPKM:235.94 TPM:122.74
2148 A_BomoMSG_c12369_g1_i2
2298bp
 uncharacterized_protein_LOC101739845_[Bombyx_mori]
GO:0004866 F endopeptidase inhibitor activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0030414 F peptidase inhibitor activity
FPKM:78.64 TPM:40.91
2149 A_BomoMSG_c1236_g1_i1
242bp
FPKM:0.00 TPM:0.00
2150 A_BomoMSG_c12370_g1_i1
906bp
 hypothetical_protein_RR48_13111_[Papilio_machaon]
FPKM:77.54 TPM:40.34
2151 A_BomoMSG_c12372_g1_i1
2632bp
 small_GTP-binding_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
FPKM:142.06 TPM:73.90
2152 A_BomoMSG_c12373_g1_i1
269bp
FPKM:2.01 TPM:1.04
2153 A_BomoMSG_c12374_g1_i1
3407bp
 UDP-galactose_4-epimerase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003978 F UDP-glucose 4-epimerase activity
GO:0005975 P carbohydrate metabolic process
GO:0006012 P galactose metabolic process
GO:0009243 P O antigen biosynthetic process
GO:0016853 F isomerase activity
GO:0050662 F obsolete coenzyme binding
FPKM:31.86 TPM:16.57
2154 A_BomoMSG_c12375_g1_i1
286bp
 Retrovirus-related_Pol_polyprotein_from_transposon_17.6_[Operophtera_brumata]
FPKM:1.32 TPM:0.69
2155 A_BomoMSG_c12375_g1_i2
301bp
 PREDICTED:_uncharacterized_protein_LOC108913684_[Anoplophora_glabripennis]
FPKM:1.98 TPM:1.03
2156 A_BomoMSG_c12376_g1_i1
257bp
FPKM:1.67 TPM:0.87
2157 A_BomoMSG_c12378_g1_i1
357bp
 ATP-binding_cassette_sub-family_D_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005324 F long-chain fatty acid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005782 C peroxisomal matrix
GO:0006633 P fatty acid biosynthetic process
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0007031 P peroxisome organization
GO:0014070 P response to organic cyclic compound
GO:0015910 P long-chain fatty acid import into peroxisome
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042760 P very long-chain fatty acid catabolic process
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043621 F protein self-association
GO:0055085 P transmembrane transport
FPKM:2.32 TPM:1.21
2158 A_BomoMSG_c12379_g1_i1
928bp
 mediator_of_RNA_polymerase_II_transcription_subunit_1_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
FPKM:2.62 TPM:1.36
2159 A_BomoMSG_c1237_g1_i1
232bp
FPKM:0.00 TPM:0.00
2160 A_BomoMSG_c12380_g1_i1
311bp
 ubiquitin-protein_ligase_E3C_[Bombyx_mori]
FPKM:4.47 TPM:2.32
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