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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1981 A_BomoMSG_c12198_g1_i1
333bp
 uncharacterized_protein_LOC101742011_isoform_X1_[Bombyx_mori]
FPKM:2.62 TPM:1.36
1982 A_BomoMSG_c12199_g1_i1
293bp
FPKM:2.93 TPM:1.52
1983 A_BomoMSG_c121_g1_i1
215bp
 14-3-3_zeta_protein_[Procambarus_clarkii]
GO:0005737 C cytoplasm
GO:0019904 F protein domain specific binding
FPKM:0.00 TPM:0.00
1984 A_BomoMSG_c121_g1_i2
243bp
 14-3-3_protein_zeta_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0019904 F protein domain specific binding
FPKM:5.09 TPM:2.65
1985 A_BomoMSG_c12200_g1_i1
279bp
FPKM:5.10 TPM:2.65
1986 A_BomoMSG_c12201_g1_i1
249bp
 semaphorin-1A_[Bombyx_mori]
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
FPKM:4.80 TPM:2.50
1987 A_BomoMSG_c12203_g1_i1
264bp
FPKM:5.23 TPM:2.72
1988 A_BomoMSG_c12205_g1_i1
501bp
 uncharacterized_protein_LOC101742164_[Bombyx_mori]
FPKM:3.24 TPM:1.69
1989 A_BomoMSG_c12206_g1_i1
241bp
 low-density_lipoprotein_receptor-related_protein_6_[Bombyx_mori]
GO:0001702 P gastrulation with mouth forming second
GO:0001756 P somitogenesis
GO:0001843 P neural tube closure
GO:0001933 P negative regulation of protein phosphorylation
GO:0001947 P heart looping
GO:0002053 P positive regulation of mesenchymal cell proliferation
GO:0003344 P pericardium morphogenesis
GO:0003401 P axis elongation
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005102 F signaling receptor binding
GO:0005109 F frizzled binding
GO:0005515 F protein binding
GO:0005769 C early endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005901 C caveola
GO:0006469 P negative regulation of protein kinase activity
GO:0006897 P endocytosis
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0009880 P embryonic pattern specification
GO:0009950 P dorsal/ventral axis specification
GO:0009952 P anterior/posterior pattern specification
GO:0009986 C cell surface
GO:0014029 P neural crest formation
GO:0014033 P neural crest cell differentiation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0017147 F Wnt-protein binding
GO:0019210 F kinase inhibitor activity
GO:0019534 F toxin transmembrane transporter activity
GO:0021587 P cerebellum morphogenesis
GO:0021794 P thalamus development
GO:0021795 P cerebral cortex cell migration
GO:0021861 P forebrain radial glial cell differentiation
GO:0021872 P forebrain generation of neurons
GO:0021874 P Wnt signaling pathway involved in forebrain neuroblast division
GO:0021915 P neural tube development
GO:0021943 P formation of radial glial scaffolds
GO:0021987 P cerebral cortex development
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0030326 P embryonic limb morphogenesis
GO:0030900 P forebrain development
GO:0030901 P midbrain development
GO:0030917 P midbrain-hindbrain boundary development
GO:0031410 C cytoplasmic vesicle
GO:0034392 P negative regulation of smooth muscle cell apoptotic process
GO:0035108 P limb morphogenesis
GO:0035115 P embryonic forelimb morphogenesis
GO:0035116 P embryonic hindlimb morphogenesis
GO:0035261 P external genitalia morphogenesis
GO:0036342 P post-anal tail morphogenesis
GO:0042074 P cell migration involved in gastrulation
GO:0042127 P regulation of cell population proliferation
GO:0042475 P odontogenesis of dentin-containing tooth
GO:0042733 P embryonic digit morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042813 F Wnt-activated receptor activity
GO:0043025 C neuronal cell body
GO:0043065 P positive regulation of apoptotic process
GO:0043235 C receptor complex
GO:0044332 P Wnt signaling pathway involved in dorsal/ventral axis specification
GO:0045202 C synapse
GO:0045599 P negative regulation of fat cell differentiation
GO:0045778 P positive regulation of ossification
GO:0045780 P positive regulation of bone resorption
GO:0045787 P positive regulation of cell cycle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046849 P bone remodeling
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0048699 P generation of neurons
GO:0048705 P skeletal system morphogenesis
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051593 P response to folic acid
GO:0060021 P roof of mouth development
GO:0060026 P convergent extension
GO:0060042 P retina morphogenesis in camera-type eye
GO:0060059 P embryonic retina morphogenesis in camera-type eye
GO:0060070 P canonical Wnt signaling pathway
GO:0060284 P regulation of cell development
GO:0060325 P face morphogenesis
GO:0060444 P branching involved in mammary gland duct morphogenesis
GO:0060535 P trachea cartilage morphogenesis
GO:0060596 P mammary placode formation
GO:0060603 P mammary gland duct morphogenesis
GO:0061310 P canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development
GO:0061324 P canonical Wnt signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation
GO:0071397 P cellular response to cholesterol
GO:0071542 P dopaminergic neuron differentiation
GO:0071901 P negative regulation of protein serine/threonine kinase activity
GO:0071936 F coreceptor activity involved in Wnt signaling pathway
GO:0072659 P protein localization to plasma membrane
GO:0090009 P primitive streak formation
GO:0090118 P receptor-mediated endocytosis involved in cholesterol transport
GO:0090244 P Wnt signaling pathway involved in somitogenesis
GO:0090245 P axis elongation involved in somitogenesis
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:1901998 P toxin transport
GO:1990851 C Wnt-Frizzled-LRP5/6 complex
GO:1990909 C Wnt signalosome
GO:2000051 P negative regulation of non-canonical Wnt signaling pathway
GO:2000055 P positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification
GO:2000149 P negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis
GO:2000151 P negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis
GO:2000162 P negative regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis
GO:2000164 P negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis
GO:2000166 P negative regulation of planar cell polarity pathway involved in pericardium morphogenesis
GO:2000168 P negative regulation of planar cell polarity pathway involved in neural tube closure
FPKM:6.50 TPM:3.38
1990 A_BomoMSG_c12207_g1_i1
268bp
FPKM:4.55 TPM:2.37
1991 A_BomoMSG_c12208_g1_i1
302bp
 protein_crossbronx_homolog_isoform_X1_[Bombyx_mori]
FPKM:2.76 TPM:1.44
1992 A_BomoMSG_c1220_g1_i1
500bp
 putative_DNA_helicase_Ino80_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0000975 F transcription cis-regulatory region binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031011 C Ino80 complex
GO:0032508 P DNA duplex unwinding
GO:0040034 P regulation of development, heterochronic
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:3.77 TPM:1.96
1993 A_BomoMSG_c12210_g1_i1
630bp
 uncharacterized_protein_LOC101739607_[Bombyx_mori]
FPKM:2.37 TPM:1.23
1994 A_BomoMSG_c12211_g1_i1
592bp
 origin_recognition_complex_subunit_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000808 C origin recognition complex
GO:0003677 F DNA binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005664 C nuclear origin of replication recognition complex
GO:0006260 P DNA replication
FPKM:3.52 TPM:1.83
1995 A_BomoMSG_c12212_g1_i1
351bp
 rho_GTPase-activating_protein_7_isoform_X1_[Bombyx_mori]
FPKM:1.79 TPM:0.93
1996 A_BomoMSG_c12213_g1_i1
215bp
FPKM:4.42 TPM:2.30
1997 A_BomoMSG_c12214_g1_i1
241bp
 ATP-binding_cassette_sub-family_A_ABCA1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0031288 P sorocarp morphogenesis
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0044351 P macropinocytosis
GO:0055085 P transmembrane transport
FPKM:5.20 TPM:2.70
1998 A_BomoMSG_c12215_g1_i1
223bp
FPKM:0.80 TPM:0.41
1999 A_BomoMSG_c12218_g1_i1
310bp
FPKM:3.00 TPM:1.56
2000 A_BomoMSG_c1221_g1_i1
225bp
 uncharacterized_protein_LOC101746155_isoform_X2_[Bombyx_mori]
GO:0005070 F obsolete SH3/SH2 adaptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0008293 P torso signaling pathway
GO:0008595 P anterior/posterior axis specification, embryo
GO:0009967 P positive regulation of signal transduction
GO:0016020 C membrane
GO:0019730 P antimicrobial humoral response
GO:0035220 P wing disc development
GO:0042169 F SH2 domain binding
GO:0042461 P photoreceptor cell development
GO:0045500 P sevenless signaling pathway
GO:0046578 P regulation of Ras protein signal transduction
FPKM:3.11 TPM:1.62
2001 A_BomoMSG_c12220_g1_i1
235bp
FPKM:2.08 TPM:1.08
2002 A_BomoMSG_c12223_g1_i1
262bp
 hypothetical_protein_KGM_208264_[Danaus_plexippus_plexippus]
FPKM:4.26 TPM:2.22
2003 A_BomoMSG_c12224_g1_i1
201bp
FPKM:1.09 TPM:0.57
2004 A_BomoMSG_c12225_g1_i1
257bp
FPKM:7.79 TPM:4.05
2005 A_BomoMSG_c12226_g1_i1
246bp
FPKM:5.56 TPM:2.89
2006 A_BomoMSG_c12227_g1_i1
293bp
FPKM:5.86 TPM:3.05
2007 A_BomoMSG_c12228_g1_i1
985bp
 minos_transposase_[Drosophila_hydei]
FPKM:4.52 TPM:2.35
2008 A_BomoMSG_c12229_g1_i1
301bp
 protein_Daple_[Bombyx_mori]
FPKM:5.55 TPM:2.89
2009 A_BomoMSG_c12230_g1_i1
357bp
conserved_hypothetical_protein_[Thiomonas_sp._CB2]
FPKM:0.00 TPM:0.00
2010 A_BomoMSG_c12230_g1_i2
368bp
conserved_hypothetical_protein_[Thiomonas_sp._CB2]
FPKM:3.30 TPM:1.72
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