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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5251 A_BomoASG_c16275_g1_i1
260bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.19 TPM:1.68
5252 A_BomoASG_c16276_g1_i1
233bp
FPKM:2.88 TPM:2.21
5253 A_BomoASG_c16277_g1_i1
1220bp
 mitochondrial_import_receptor_subunit_TOM40_homolog_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005742 C mitochondrial outer membrane translocase complex
GO:0006626 P protein targeting to mitochondrion
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015031 P protein transport
GO:0015266 F protein transmembrane transporter activity
GO:0015288 F porin activity
GO:0015450 F protein-transporting ATPase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030150 P protein import into mitochondrial matrix
GO:0046930 C pore complex
GO:0055085 P transmembrane transport
GO:0071456 P cellular response to hypoxia
FPKM:23.21 TPM:17.80
5254 A_BomoASG_c16278_g1_i1
389bp
 queuine_tRNA-ribosyltransferase_catalytic_subunit_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008479 F queuine tRNA-ribosyltransferase activity
GO:0008616 P queuosine biosynthetic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0046872 F metal ion binding
FPKM:1.25 TPM:0.96
5255 A_BomoASG_c16279_g1_i1
239bp
FPKM:8.77 TPM:6.72
5256 A_BomoASG_c16280_g1_i1
1747bp
 ran_GTPase-activating_protein_1_isoform_X1_[Bombyx_mori]
GO:0000776 C kinetochore
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:1.36 TPM:1.04
5257 A_BomoASG_c16280_g1_i2
1855bp
 ran_GTPase-activating_protein_1_isoform_X1_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000922 C spindle pole
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0007062 P sister chromatid cohesion
GO:0007165 P signal transduction
GO:0008536 F small GTPase binding
GO:0016020 C membrane
GO:0016925 P protein sumoylation
GO:0030425 C dendrite
GO:0031625 F ubiquitin protein ligase binding
GO:0031965 C nuclear membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0046826 P negative regulation of protein export from nucleus
GO:0048471 C perinuclear region of cytoplasm
GO:0048678 P response to axon injury
GO:0071375 P cellular response to peptide hormone stimulus
GO:0072686 C mitotic spindle
GO:1904115 C axon cytoplasm
GO:1904117 P cellular response to vasopressin
GO:1990723 C cytoplasmic periphery of the nuclear pore complex
FPKM:27.23 TPM:20.89
5258 A_BomoASG_c16281_g1_i1
260bp
 Retrotransposable_element_Tf2_155_kDa_protein_type_1_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.10 TPM:0.84
5259 A_BomoASG_c16282_g1_i1
365bp
 PREDICTED:_uncharacterized_protein_LOC106710629_[Papilio_machaon]
FPKM:2.79 TPM:2.14
5260 A_BomoASG_c16283_g1_i1
534bp
 uncharacterized_protein_LOC101736030_isoform_X4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008150 P biological_process
FPKM:1.40 TPM:1.07
5261 A_BomoASG_c16284_g1_i1
215bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.71 TPM:2.08
5262 A_BomoASG_c16285_g1_i1
224bp
hypothetical_protein_BMR85_025725_[Achromobacter_sp._KAs_3-5]
FPKM:0.00 TPM:0.00
5263 A_BomoASG_c16288_g1_i1
234bp
 hypothetical_protein_AB894_15365,_partial_[Piscirickettsia_salmonis]
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:2.85 TPM:2.19
5264 A_BomoASG_c16289_g1_i1
945bp
 uncharacterized_protein_LOC101740578_[Bombyx_mori]
FPKM:1.33 TPM:1.02
5265 A_BomoASG_c16289_g1_i2
764bp
 uncharacterized_protein_LOC101740578_[Bombyx_mori]
FPKM:0.11 TPM:0.09
5266 A_BomoASG_c1628_g1_i1
433bp
 uncharacterized_protein_LOC101736154_[Bombyx_mori]
FPKM:6.76 TPM:5.19
5267 A_BomoASG_c16292_g1_i1
208bp
 pyruvate_dehydrogenase_phosphatase_regulatory_subunit,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:6.00 TPM:4.60
5268 A_BomoASG_c16293_g1_i1
644bp
 uncharacterized_protein_LOC101742758_isoform_X1_[Bombyx_mori]
FPKM:2.53 TPM:1.94
5269 A_BomoASG_c16294_g1_i1
242bp
 myb/SANT-like_DNA-binding_domain-containing_protein_3_[Bombyx_mori]
FPKM:3.27 TPM:2.50
5270 A_BomoASG_c16295_g1_i1
430bp
FPKM:2.99 TPM:2.29
5271 A_BomoASG_c16297_g1_i1
695bp
FPKM:4.47 TPM:3.43
5272 A_BomoASG_c16298_g1_i1
228bp
FPKM:1.53 TPM:1.17
5273 A_BomoASG_c16299_g1_i1
314bp
FPKM:9.92 TPM:7.61
5274 A_BomoASG_c1629_g1_i1
374bp
 Tyrosine-protein_phosphatase_99A_[Papilio_xuthus]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007414 P axonal defasciculation
GO:0007415 P defasciculation of motor neuron axon
GO:0008045 P motor neuron axon guidance
GO:0010906 P regulation of glucose metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
FPKM:2.68 TPM:2.05
5275 A_BomoASG_c162_g1_i1
272bp
FPKM:2.47 TPM:1.90
5276 A_BomoASG_c16300_g1_i1
861bp
 golgin_IMH1_[Bombyx_mori]
FPKM:3.09 TPM:2.37
5277 A_BomoASG_c16302_g1_i1
470bp
FPKM:1.27 TPM:0.97
5278 A_BomoASG_c16303_g1_i1
213bp
 probable_peroxisomal_acyl-coenzyme_A_oxidase_1_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005777 C peroxisome
GO:0006091 P generation of precursor metabolites and energy
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006693 P prostaglandin metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0019395 P fatty acid oxidation
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.86 TPM:1.43
5279 A_BomoASG_c16304_g1_i1
425bp
FPKM:1.52 TPM:1.17
5280 A_BomoASG_c16305_g1_i1
241bp
FPKM:5.28 TPM:4.05
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