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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4471 A_BomoASG_c15394_g1_i2
646bp
 zinc_finger_protein_808_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.00 TPM:0.77
4472 A_BomoASG_c15395_g1_i1
1989bp
 lysine--tRNA_ligase_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004824 F lysine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006430 P lysyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:61.43 TPM:47.12
4473 A_BomoASG_c15396_g1_i1
722bp
FPKM:6.21 TPM:4.76
4474 A_BomoASG_c15398_g1_i1
552bp
 phosphatidate_cytidylyltransferase,_photoreceptor-specific_[Bombyx_mori]
GO:0004605 F phosphatidate cytidylyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016024 P CDP-diacylglycerol biosynthetic process
GO:0016740 F transferase activity
GO:0016772 F transferase activity, transferring phosphorus-containing groups
GO:0016779 F nucleotidyltransferase activity
FPKM:6.22 TPM:4.77
4475 A_BomoASG_c15399_g1_i1
258bp
hypothetical_protein_BW246_08475,_partial_[Helicobacter_pylori]
FPKM:0.00 TPM:0.00
4476 A_BomoASG_c1539_g1_i1
337bp
FPKM:3.22 TPM:2.47
4477 A_BomoASG_c15401_g1_i1
264bp
FPKM:2.12 TPM:1.62
4478 A_BomoASG_c15402_g1_i1
255bp
 mRNA_transport_regulator_3_isoform_X1_[Bombyx_mori]
FPKM:3.44 TPM:2.64
4479 A_BomoASG_c15404_g1_i1
523bp
FPKM:4.79 TPM:3.68
4480 A_BomoASG_c15405_g1_i1
341bp
FPKM:1.57 TPM:1.21
4481 A_BomoASG_c15406_g1_i1
208bp
FPKM:7.00 TPM:5.37
4482 A_BomoASG_c15407_g1_i1
254bp
 ELAV-like_protein_2_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0030154 P cell differentiation
FPKM:1.16 TPM:0.89
4483 A_BomoASG_c15411_g1_i1
589bp
FPKM:3.52 TPM:2.70
4484 A_BomoASG_c15412_g1_i1
892bp
 ras-related_protein_Rab-35_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000910 P cytokinesis
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008104 P protein localization
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0019003 F GDP binding
GO:0019882 P antigen processing and presentation
GO:0030136 C clathrin-coated vesicle
GO:0031175 P neuron projection development
GO:0031253 C cell projection membrane
GO:0031410 C cytoplasmic vesicle
GO:0032456 P endocytic recycling
GO:0036010 P protein localization to endosome
GO:0042470 C melanosome
GO:0045171 C intercellular bridge
GO:0045334 C clathrin-coated endocytic vesicle
GO:0048227 P plasma membrane to endosome transport
GO:0070062 C extracellular exosome
GO:1990090 P cellular response to nerve growth factor stimulus
FPKM:41.27 TPM:31.65
4485 A_BomoASG_c15413_g1_i1
508bp
 protein_CREG1_[Bombyx_mori]
GO:0003714 F transcription corepressor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005667 C transcription regulator complex
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0040008 P regulation of growth
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:1903507 P negative regulation of nucleic acid-templated transcription
FPKM:2.83 TPM:2.17
4486 A_BomoASG_c15415_g1_i1
358bp
FPKM:4.33 TPM:3.32
4487 A_BomoASG_c15416_g1_i1
509bp
FPKM:4.98 TPM:3.82
4488 A_BomoASG_c15417_g1_i1
372bp
FPKM:2.16 TPM:1.66
4489 A_BomoASG_c15418_g1_i1
4107bp
 coatomer_protein_complex_subunit_alpha_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005179 F hormone activity
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
FPKM:42.50 TPM:32.60
4490 A_BomoASG_c15418_g1_i2
4122bp
 coatomer_protein_complex_subunit_alpha_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005179 F hormone activity
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006891 P intra-Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
FPKM:11.79 TPM:9.04
4491 A_BomoASG_c15419_g1_i1
483bp
FPKM:3.58 TPM:2.75
4492 A_BomoASG_c15419_g1_i2
466bp
FPKM:0.00 TPM:0.00
4493 A_BomoASG_c1541_g1_i1
392bp
 reverse_ribonuclease_integrase,_partial_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.24 TPM:0.95
4494 A_BomoASG_c15421_g1_i1
267bp
FPKM:11.86 TPM:9.10
4495 A_BomoASG_c15422_g1_i1
226bp
 Transposable_element_Tc3_transposase_[Papilio_machaon]
FPKM:0.78 TPM:0.60
4496 A_BomoASG_c15424_g1_i1
206bp
FPKM:4.01 TPM:3.08
4497 A_BomoASG_c15425_g1_i1
335bp
FPKM:2.28 TPM:1.75
4498 A_BomoASG_c15426_g1_i1
354bp
FPKM:2.35 TPM:1.81
4499 A_BomoASG_c15427_g1_i1
2004bp
FPKM:73.77 TPM:56.59
4500 A_BomoASG_c15429_g1_i1
223bp
FPKM:8.13 TPM:6.24
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