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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4081 A_BomoASG_c14965_g1_i2
970bp
FPKM:3.91 TPM:3.00
4082 A_BomoASG_c14966_g1_i1
331bp
FPKM:1.33 TPM:1.02
4083 A_BomoASG_c14968_g1_i1
525bp
 polynucleotide_5'-hydroxyl-kinase_NOL9_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000448 P cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051731 F polynucleotide 5'-hydroxyl-kinase activity
FPKM:4.71 TPM:3.61
4084 A_BomoASG_c14968_g1_i2
425bp
 polynucleotide_5'-hydroxyl-kinase_NOL9_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000448 P cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000460 P maturation of 5.8S rRNA
GO:0003723 F RNA binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051731 F polynucleotide 5'-hydroxyl-kinase activity
FPKM:27.36 TPM:20.98
4085 A_BomoASG_c14968_g1_i3
2582bp
 polynucleotide_5'-hydroxyl-kinase_NOL9_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000448 P cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051731 F polynucleotide 5'-hydroxyl-kinase activity
FPKM:23.68 TPM:18.16
4086 A_BomoASG_c14969_g1_i1
473bp
 uncharacterized_protein_LOC692883_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:6.19 TPM:4.75
4087 A_BomoASG_c14969_g1_i2
599bp
 uncharacterized_protein_LOC692883_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:20.35 TPM:15.61
4088 A_BomoASG_c14970_g1_i1
309bp
FPKM:5.30 TPM:4.07
4089 A_BomoASG_c14972_g1_i1
319bp
FPKM:2.49 TPM:1.91
4090 A_BomoASG_c14973_g1_i1
1025bp
 ubiquitin-conjugating_enzyme_E2_G2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0018279 P protein N-linked glycosylation via asparagine
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0070936 P protein K48-linked ubiquitination
FPKM:27.85 TPM:21.36
4091 A_BomoASG_c14974_g1_i1
432bp
FPKM:3.82 TPM:2.93
4092 A_BomoASG_c14975_g1_i1
450bp
FPKM:3.58 TPM:2.75
4093 A_BomoASG_c14976_g1_i1
393bp
 arylsulfatase_I_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004065 F arylsulfatase activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006687 P glycosphingolipid metabolic process
GO:0008152 P metabolic process
GO:0008484 F sulfuric ester hydrolase activity
GO:0016787 F hydrolase activity
GO:0043687 P post-translational protein modification
GO:0046872 F metal ion binding
FPKM:2.47 TPM:1.89
4094 A_BomoASG_c14977_g1_i1
2067bp
 akirin_protein_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002376 P immune system process
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005719 C euchromatin
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0007526 P larval somatic muscle development
GO:0016203 P muscle attachment
GO:0035060 C brahma complex
GO:0045087 P innate immune response
GO:0045088 P regulation of innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050829 P defense response to Gram-negative bacterium
FPKM:0.00 TPM:0.00
4095 A_BomoASG_c14977_g1_i2
2235bp
 akirin_protein_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002376 P immune system process
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005719 C euchromatin
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0007526 P larval somatic muscle development
GO:0016203 P muscle attachment
GO:0035060 C brahma complex
GO:0045087 P innate immune response
GO:0045088 P regulation of innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050829 P defense response to Gram-negative bacterium
FPKM:44.64 TPM:34.24
4096 A_BomoASG_c14979_g1_i1
280bp
FPKM:8.92 TPM:6.84
4097 A_BomoASG_c1497_g1_i1
289bp
FPKM:1.74 TPM:1.33
4098 A_BomoASG_c14980_g1_i1
501bp
FPKM:2.21 TPM:1.69
4099 A_BomoASG_c14981_g1_i1
206bp
FPKM:3.09 TPM:2.37
4100 A_BomoASG_c14984_g1_i1
992bp
FPKM:15.57 TPM:11.94
4101 A_BomoASG_c14985_g1_i1
249bp
 exopolyphosphatase_PRUNE1_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004427 F inorganic diphosphatase activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005925 C focal adhesion
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016462 F pyrophosphatase activity
GO:0016787 F hydrolase activity
GO:0030054 C cell junction
GO:0046872 F metal ion binding
FPKM:4.26 TPM:3.27
4102 A_BomoASG_c14986_g1_i1
258bp
FPKM:2.23 TPM:1.71
4103 A_BomoASG_c14987_g1_i1
218bp
preprotein_translocase_subunit_SecG_[Pseudomonas_sp._CFT9]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0009306 P protein secretion
GO:0015031 P protein transport
GO:0015450 F protein-transporting ATPase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0071806 P protein transmembrane transport
FPKM:6.94 TPM:5.33
4104 A_BomoASG_c14989_g1_i1
303bp
FPKM:3.55 TPM:2.72
4105 A_BomoASG_c1498_g1_i1
323bp
FPKM:0.70 TPM:0.53
4106 A_BomoASG_c14993_g1_i1
1128bp
 ZZ-type_zinc_finger-containing_protein_3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:21.55 TPM:16.53
4107 A_BomoASG_c14994_g1_i1
289bp
FPKM:3.91 TPM:3.00
4108 A_BomoASG_c14995_g1_i1
698bp
FPKM:4.12 TPM:3.16
4109 A_BomoASG_c14996_g1_i1
489bp
 mitochondrial_phosphoenolpyruvate_carboxykinase_isoform_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004611 F phosphoenolpyruvate carboxykinase activity
GO:0004613 F phosphoenolpyruvate carboxykinase (GTP) activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0006094 P gluconeogenesis
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0017076 F purine nucleotide binding
GO:0046872 F metal ion binding
FPKM:3.17 TPM:2.43
4110 A_BomoASG_c14997_g1_i1
391bp
FPKM:4.97 TPM:3.81
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