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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3601 A_BomoASG_c14477_g1_i1
471bp
FPKM:2.05 TPM:1.57
3602 A_BomoASG_c14477_g2_i1
205bp
FPKM:0.00 TPM:0.00
3603 A_BomoASG_c14478_g1_i1
314bp
FPKM:5.88 TPM:4.51
3604 A_BomoASG_c14478_g1_i2
222bp
FPKM:0.00 TPM:0.00
3605 A_BomoASG_c14479_g1_i1
415bp
FPKM:1.81 TPM:1.39
3606 A_BomoASG_c1447_g1_i1
440bp
FPKM:2.89 TPM:2.21
3607 A_BomoASG_c14480_g1_i1
271bp
FPKM:9.97 TPM:7.65
3608 A_BomoASG_c14481_g1_i1
227bp
FPKM:0.77 TPM:0.59
3609 A_BomoASG_c14482_g1_i1
337bp
FPKM:22.51 TPM:17.26
3610 A_BomoASG_c14483_g1_i1
898bp
FPKM:23.90 TPM:18.33
3611 A_BomoASG_c14484_g1_i1
5456bp
 ATP-dependent_RNA_helicase_dbp2_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009299 P mRNA transcription
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019899 F enzyme binding
GO:0030331 F estrogen receptor binding
GO:0030529 C ribonucleoprotein complex
GO:0033148 P positive regulation of intracellular estrogen receptor signaling pathway
GO:0036002 F pre-mRNA binding
GO:0043517 P positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0044822 F RNA binding
GO:0045069 P regulation of viral genome replication
GO:0045667 P regulation of osteoblast differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048306 F calcium-dependent protein binding
GO:0048511 P rhythmic process
GO:0050681 F androgen receptor binding
GO:0060765 P regulation of androgen receptor signaling pathway
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
GO:2001014 P regulation of skeletal muscle cell differentiation
FPKM:145.79 TPM:111.82
3612 A_BomoASG_c14486_g1_i1
246bp
 EH_domain-binding_protein_1_[Bombyx_mori]
FPKM:8.15 TPM:6.25
3613 A_BomoASG_c14488_g1_i1
1391bp
 RNA-binding_protein_25_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0042981 P regulation of apoptotic process
GO:0044822 F RNA binding
FPKM:11.77 TPM:9.03
3614 A_BomoASG_c14488_g1_i2
1231bp
 RNA-binding_protein_25_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0042981 P regulation of apoptotic process
GO:0044822 F RNA binding
FPKM:5.55 TPM:4.26
3615 A_BomoASG_c14490_g1_i1
312bp
 ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]
FPKM:5.95 TPM:4.56
3616 A_BomoASG_c14491_g1_i1
339bp
FPKM:5.09 TPM:3.90
3617 A_BomoASG_c14492_g1_i1
217bp
FPKM:3.52 TPM:2.70
3618 A_BomoASG_c14493_g1_i1
493bp
FPKM:2.61 TPM:2.00
3619 A_BomoASG_c14495_g1_i1
486bp
FPKM:5.86 TPM:4.50
3620 A_BomoASG_c14498_g1_i1
722bp
FPKM:4.47 TPM:3.43
3621 A_BomoASG_c14499_g1_i1
312bp
 uncharacterized_LOC101737518_[Bombyx_mori]
FPKM:2.60 TPM:2.00
3622 A_BomoASG_c144_g1_i1
201bp
FPKM:1.12 TPM:0.86
3623 A_BomoASG_c14500_g1_i1
400bp
FPKM:2.40 TPM:1.84
3624 A_BomoASG_c14501_g1_i1
397bp
FPKM:1.13 TPM:0.87
3625 A_BomoASG_c14501_g1_i2
391bp
FPKM:0.58 TPM:0.45
3626 A_BomoASG_c14502_g1_i1
506bp
FPKM:3.85 TPM:2.96
3627 A_BomoASG_c14503_g1_i1
753bp
 DNA_polymerase_zeta_catalytic_subunit_isoform_X7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016035 C zeta DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019985 P translesion synthesis
GO:0042276 P error-prone translesion synthesis
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.76 TPM:2.12
3628 A_BomoASG_c14504_g1_i1
427bp
FPKM:7.66 TPM:5.88
3629 A_BomoASG_c14505_g1_i1
278bp
 furin-like_convetase_isoform_X3_[Bombyx_mori]
FPKM:5.16 TPM:3.96
3630 A_BomoASG_c14505_g1_i2
242bp
 furin-like_convetase_isoform_X3_[Bombyx_mori]
FPKM:1.34 TPM:1.03
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