SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/58621
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3481 A_BomoASG_c14353_g1_i1
248bp
FPKM:22.73 TPM:17.43
3482 A_BomoASG_c14353_g1_i2
217bp
 hypothetical_protein_NBO_272g0001_[Nosema_bombycis_CQ1]
FPKM:0.00 TPM:0.00
3483 A_BomoASG_c14354_g1_i1
398bp
FPKM:5.55 TPM:4.26
3484 A_BomoASG_c14355_g1_i1
349bp
FPKM:6.04 TPM:4.63
3485 A_BomoASG_c14356_g1_i1
213bp
 plasminogen_activator_inhibitor_1_RNA-binding_protein-like_[Bombyx_mori]
FPKM:2.79 TPM:2.14
3486 A_BomoASG_c14357_g1_i1
207bp
FPKM:2.03 TPM:1.56
3487 A_BomoASG_c14358_g1_i1
267bp
FPKM:3.09 TPM:2.37
3488 A_BomoASG_c14359_g1_i1
669bp
 mediator_of_RNA_polymerase_II_transcription_subunit_29_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016592 C mediator complex
FPKM:18.67 TPM:14.32
3489 A_BomoASG_c14360_g1_i1
298bp
 PREDICTED:_uncharacterized_protein_LOC106137743_[Amyelois_transitella]
FPKM:2.04 TPM:1.56
3490 A_BomoASG_c14361_g1_i1
576bp
FPKM:24.32 TPM:18.66
3491 A_BomoASG_c14362_g1_i1
427bp
 PREDICTED:_uncharacterized_protein_LOC106713162_[Papilio_machaon]
FPKM:2.37 TPM:1.82
3492 A_BomoASG_c14363_g1_i1
3622bp
 uncharacterized_protein_LOC101738318_[Bombyx_mori]
FPKM:119.97 TPM:92.02
3493 A_BomoASG_c14363_g1_i2
3717bp
 uncharacterized_protein_LOC101738318_[Bombyx_mori]
FPKM:30.52 TPM:23.41
3494 A_BomoASG_c14366_g1_i1
562bp
 LSM1-like_protein_[Bombyx_mori]
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000339 F RNA cap binding
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0019827 P stem cell population maintenance
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0045665 P negative regulation of neuron differentiation
GO:0071044 P histone mRNA catabolic process
FPKM:10.26 TPM:7.87
3495 A_BomoASG_c14368_g1_i1
285bp
 uncharacterized_protein_LOC101737831_[Bombyx_mori]
FPKM:1.34 TPM:1.03
3496 A_BomoASG_c14370_g1_i1
906bp
FPKM:1.73 TPM:1.32
3497 A_BomoASG_c14371_g1_i1
2707bp
 leishmanolysin-like_peptidase_isoform_X3_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005737 C cytoplasm
GO:0006338 P chromatin remodeling
GO:0006508 P proteolysis
GO:0007049 P cell cycle
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0007100 P mitotic centrosome separation
GO:0007155 P cell adhesion
GO:0007420 P brain development
GO:0007444 P imaginal disc development
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008354 P germ cell migration
GO:0008406 P gonad development
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0019915 P lipid storage
GO:0022900 P electron transport chain
GO:0031252 C cell leading edge
GO:0045842 P positive regulation of mitotic metaphase/anaphase transition
GO:0046872 F metal ion binding
GO:0051225 P spindle assembly
GO:0051298 P centrosome duplication
GO:0051301 P cell division
GO:1902769 P regulation of choline O-acetyltransferase activity
FPKM:92.71 TPM:71.11
3498 A_BomoASG_c14372_g1_i1
320bp
 cuticular_protein_RR-2_motif_68_precursor_[Bombyx_mori]
GO:0042302 F structural constituent of cuticle
FPKM:6.02 TPM:4.62
3499 A_BomoASG_c14373_g1_i1
367bp
FPKM:4.98 TPM:3.82
3500 A_BomoASG_c14374_g1_i1
497bp
 uncharacterized_protein_LOC110385215_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3501 A_BomoASG_c14374_g1_i2
913bp
 uncharacterized_protein_LOC110385215_[Bombyx_mori]
FPKM:2.41 TPM:1.85
3502 A_BomoASG_c14375_g1_i1
346bp
FPKM:1.53 TPM:1.18
3503 A_BomoASG_c14376_g1_i1
257bp
FPKM:1.69 TPM:1.30
3504 A_BomoASG_c14377_g1_i1
777bp
FPKM:9.09 TPM:6.98
3505 A_BomoASG_c14378_g1_i1
284bp
 RE36839p_[Drosophila_melanogaster]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.70 TPM:2.07
3506 A_BomoASG_c14379_g1_i1
382bp
FPKM:3.88 TPM:2.97
3507 A_BomoASG_c1437_g1_i1
242bp
FPKM:1.31 TPM:1.00
3508 A_BomoASG_c14380_g1_i1
4070bp
 serine/arginine_repetitive_matrix_protein_1_isoform_X2_[Bombyx_mori]
FPKM:70.79 TPM:54.30
3509 A_BomoASG_c14381_g1_i1
538bp
 nuclear_hormone_receptor_FTZ-F1_beta_[Bombyx_mori]
FPKM:3.23 TPM:2.47
3510 A_BomoASG_c14383_g1_i1
305bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105841478_[Bombyx_mori]
FPKM:0.39 TPM:0.30
previous next from show/58621

- SilkBase 1999-2023 -