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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3451 A_BomoASG_c14327_g1_i1
232bp
 muskelin_isoform_X1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005938 C cell cortex
GO:0007160 P cell-matrix adhesion
GO:0008360 P regulation of cell shape
GO:0031532 P actin cytoskeleton reorganization
GO:0042995 C cell projection
FPKM:0.73 TPM:0.56
3452 A_BomoASG_c14327_g2_i1
371bp
 muskelin_isoform_X1_[Bombyx_mori]
FPKM:1.63 TPM:1.25
3453 A_BomoASG_c14328_g1_i1
400bp
FPKM:8.62 TPM:6.61
3454 A_BomoASG_c14329_g1_i1
545bp
FPKM:4.22 TPM:3.24
3455 A_BomoASG_c1432_g1_i1
363bp
FPKM:0.56 TPM:0.43
3456 A_BomoASG_c14330_g1_i1
780bp
 OTU_domain-containing_protein_7B_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0002376 P immune system process
GO:0002385 P mucosal immune response
GO:0003677 F DNA binding
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006955 P immune response
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0032717 P negative regulation of interleukin-8 production
GO:0035871 P protein K11-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0043124 P negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071108 P protein K48-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1900181 P negative regulation of protein localization to nucleus
GO:1990380 F Lys48-specific deubiquitinase activity
FPKM:18.62 TPM:14.28
3457 A_BomoASG_c14330_g1_i2
879bp
 OTU_domain-containing_protein_7B_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0002376 P immune system process
GO:0002385 P mucosal immune response
GO:0003677 F DNA binding
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006955 P immune response
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0032717 P negative regulation of interleukin-8 production
GO:0035871 P protein K11-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0043124 P negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071108 P protein K48-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1900181 P negative regulation of protein localization to nucleus
GO:1990380 F Lys48-specific deubiquitinase activity
FPKM:2.00 TPM:1.53
3458 A_BomoASG_c14331_g1_i1
232bp
FPKM:2.19 TPM:1.68
3459 A_BomoASG_c14331_g1_i2
205bp
FPKM:1.05 TPM:0.80
3460 A_BomoASG_c14333_g1_i1
410bp
FPKM:2.30 TPM:1.77
3461 A_BomoASG_c14334_g1_i1
210bp
FPKM:5.83 TPM:4.47
3462 A_BomoASG_c14334_g2_i1
530bp
FPKM:5.80 TPM:4.45
3463 A_BomoASG_c14335_g1_i1
412bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:0.00 TPM:0.00
3464 A_BomoASG_c14335_g1_i2
514bp
 reverse_transcriptase,_partial_[Bombyx_mandarina]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.15 TPM:0.88
3465 A_BomoASG_c14335_g1_i3
473bp
 reverse_transcriptase,_partial_[Bombyx_mandarina]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:0.00 TPM:0.00
3466 A_BomoASG_c14336_g1_i1
1026bp
 sterol_regulatory_element-binding_protein_cleavage-activating_protein_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0008022 F protein C-terminus binding
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030127 C COPII vesicle coat
GO:0031410 C cytoplasmic vesicle
GO:0032933 P SREBP signaling pathway
GO:0035105 P obsolete sterol regulatory element binding protein import into nucleus
GO:0072600 P protein localization to Golgi apparatus
GO:0090110 P COPII-coated vesicle cargo loading
FPKM:3.38 TPM:2.60
3467 A_BomoASG_c14337_g1_i1
216bp
FPKM:4.46 TPM:3.42
3468 A_BomoASG_c14338_g1_i1
217bp
FPKM:7.92 TPM:6.07
3469 A_BomoASG_c14339_g1_i1
1077bp
 Cytochrome_b561_domain-containing_protein_1_[Operophtera_brumata]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:61.15 TPM:46.91
3470 A_BomoASG_c14340_g1_i1
223bp
FPKM:1.63 TPM:1.25
3471 A_BomoASG_c14341_g1_i1
302bp
FPKM:13.48 TPM:10.34
3472 A_BomoASG_c14342_g1_i1
204bp
 uncharacterized_protein_LOC101746639_isoform_X1_[Bombyx_mori]
FPKM:2.13 TPM:1.63
3473 A_BomoASG_c14343_g1_i1
644bp
FPKM:2.65 TPM:2.03
3474 A_BomoASG_c14344_g1_i1
208bp
 midasin_isoform_X1_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006461 P protein-containing complex assembly
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0045111 C intermediate filament cytoskeleton
GO:0051082 F unfolded protein binding
FPKM:5.00 TPM:3.84
3475 A_BomoASG_c14345_g1_i1
402bp
FPKM:2.38 TPM:1.82
3476 A_BomoASG_c14349_g1_i1
395bp
 zinc_finger_protein_39_isoform_X15_[Bombyx_mori]
FPKM:1.96 TPM:1.50
3477 A_BomoASG_c1434_g1_i1
254bp
 uncharacterized_protein_LOC101737178_[Bombyx_mori]
FPKM:3.48 TPM:2.67
3478 A_BomoASG_c14350_g1_i1
257bp
FPKM:1.13 TPM:0.86
3479 A_BomoASG_c14351_g1_i1
399bp
 Uncharacterized_protein_OBRU01_00964_[Operophtera_brumata]
FPKM:1.20 TPM:0.92
3480 A_BomoASG_c14352_g1_i1
207bp
 peroxidase-like,_partial_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005506 F iron ion binding
GO:0005576 C extracellular region
GO:0006909 P phagocytosis
GO:0006979 P response to oxidative stress
GO:0007306 P eggshell chorion assembly
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0022008 P neurogenesis
GO:0042600 C egg chorion
GO:0042744 P hydrogen peroxide catabolic process
GO:0045471 P response to ethanol
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:7.11 TPM:5.45
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