SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/58621
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2851 A_BomoASG_c13640_g1_i1
343bp
FPKM:3.43 TPM:2.63
2852 A_BomoASG_c13641_g1_i1
275bp
FPKM:0.00 TPM:0.00
2853 A_BomoASG_c13641_g1_i2
268bp
FPKM:1.53 TPM:1.18
2854 A_BomoASG_c13642_g1_i1
306bp
 Fanconi_anemia,_complementation_group_D2_[Bombyx_mori]
GO:0000793 C condensed chromosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007129 P homologous chromosome pairing at meiosis
GO:0007275 P multicellular organism development
GO:0007276 P gamete generation
GO:0010332 P response to gamma radiation
GO:0034599 P cellular response to oxidative stress
GO:0045589 P regulation of regulatory T cell differentiation
GO:0048854 P brain morphogenesis
GO:0050727 P regulation of inflammatory response
GO:0051090 P regulation of DNA-binding transcription factor activity
GO:0070182 F DNA polymerase binding
GO:0097150 P neuronal stem cell population maintenance
GO:2000348 P regulation of CD40 signaling pathway
FPKM:3.09 TPM:2.37
2855 A_BomoASG_c13643_g1_i1
1395bp
FPKM:27.59 TPM:21.17
2856 A_BomoASG_c13644_g1_i1
218bp
FPKM:0.87 TPM:0.67
2857 A_BomoASG_c13645_g1_i1
247bp
FPKM:3.72 TPM:2.86
2858 A_BomoASG_c13649_g1_i1
1512bp
 peflin_[Bombyx_mori]
GO:0004198 F calcium-dependent cysteine-type endopeptidase activity
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0016020 C membrane
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0051592 P response to calcium ion
GO:0070062 C extracellular exosome
FPKM:47.26 TPM:36.25
2859 A_BomoASG_c13650_g1_i1
345bp
FPKM:6.78 TPM:5.20
2860 A_BomoASG_c13652_g1_i1
225bp
FPKM:2.38 TPM:1.83
2861 A_BomoASG_c13652_g2_i1
728bp
FPKM:5.45 TPM:4.18
2862 A_BomoASG_c13653_g1_i1
426bp
FPKM:5.42 TPM:4.16
2863 A_BomoASG_c13654_g1_i1
308bp
FPKM:2.67 TPM:2.05
2864 A_BomoASG_c13655_g1_i1
667bp
 uncharacterized_protein_LOC105842971_[Bombyx_mori]
FPKM:4.95 TPM:3.79
2865 A_BomoASG_c13656_g1_i1
306bp
FPKM:5.02 TPM:3.85
2866 A_BomoASG_c13659_g1_i1
517bp
 USP6_N-terminal-like_protein_isoform_X4_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0007030 P Golgi organization
GO:0012505 C endomembrane system
GO:0016023 C cytoplasmic vesicle
GO:0017137 F small GTPase binding
GO:0019068 P virion assembly
GO:0031338 P regulation of vesicle fusion
GO:0031410 C cytoplasmic vesicle
GO:0035526 P retrograde transport, plasma membrane to Golgi
GO:0043547 P positive regulation of GTPase activity
GO:0048227 P plasma membrane to endosome transport
GO:0090630 P activation of GTPase activity
GO:1903358 P regulation of Golgi organization
FPKM:2.92 TPM:2.24
2867 A_BomoASG_c1365_g1_i1
260bp
FPKM:5.48 TPM:4.21
2868 A_BomoASG_c13660_g1_i1
221bp
 cell_division_cycle_25_isoform_X1_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000278 P mitotic cell cycle
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004726 F non-membrane spanning protein tyrosine phosphatase activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006470 P protein dephosphorylation
GO:0007030 P Golgi organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007088 P regulation of mitotic nuclear division
GO:0007099 P centriole replication
GO:0007346 P regulation of mitotic cell cycle
GO:0007369 P gastrulation
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007488 P histoblast morphogenesis
GO:0007498 P mesoderm development
GO:0008138 F protein tyrosine/serine/threonine phosphatase activity
GO:0008283 P cell population proliferation
GO:0008284 P positive regulation of cell population proliferation
GO:0016787 F hydrolase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045792 P negative regulation of cell size
GO:0045930 P negative regulation of mitotic cell cycle
GO:0045931 P positive regulation of mitotic cell cycle
GO:0045977 P positive regulation of mitotic cell cycle, embryonic
GO:0046331 P lateral inhibition
GO:0051301 P cell division
GO:0060305 P regulation of cell diameter
FPKM:8.34 TPM:6.40
2869 A_BomoASG_c13661_g1_i1
2268bp
 1,4-alpha-glucan-branching_enzyme_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003844 F 1,4-alpha-glucan branching enzyme activity
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0005977 P glycogen metabolic process
GO:0005978 P glycogen biosynthetic process
GO:0006091 P generation of precursor metabolites and energy
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0043169 F cation binding
GO:0070062 C extracellular exosome
FPKM:44.11 TPM:33.83
2870 A_BomoASG_c13662_g1_i1
386bp
FPKM:4.06 TPM:3.12
2871 A_BomoASG_c13664_g1_i1
217bp
FPKM:0.00 TPM:0.00
2872 A_BomoASG_c13669_g1_i1
445bp
FPKM:1.82 TPM:1.40
2873 A_BomoASG_c1366_g1_i1
201bp
 pikachurin_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0030054 C cell junction
GO:0045202 C synapse
FPKM:3.35 TPM:2.57
2874 A_BomoASG_c13671_g1_i1
332bp
FPKM:2.31 TPM:1.77
2875 A_BomoASG_c13673_g1_i1
308bp
 RNA_helicase_Mov10l1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007223 P Wnt signaling pathway, calcium modulating pathway
GO:0016787 F hydrolase activity
GO:0031047 P gene silencing by RNA
GO:0035279 P miRNA-mediated gene silencing by mRNA destabilization
GO:0044822 F RNA binding
GO:0048015 P phosphatidylinositol-mediated signaling
FPKM:0.57 TPM:0.44
2876 A_BomoASG_c13673_g1_i2
333bp
 RNA_helicase_Mov10l1_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007223 P Wnt signaling pathway, calcium modulating pathway
GO:0016787 F hydrolase activity
GO:0031047 P gene silencing by RNA
GO:0035279 P miRNA-mediated gene silencing by mRNA destabilization
GO:0044822 F RNA binding
GO:0048015 P phosphatidylinositol-mediated signaling
FPKM:10.03 TPM:7.69
2877 A_BomoASG_c13674_g1_i1
700bp
 otoferlin-like_isoform_X2_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0010996 P response to auditory stimulus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016323 C basolateral plasma membrane
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0050885 P neuromuscular process controlling balance
FPKM:5.19 TPM:3.98
2878 A_BomoASG_c13675_g1_i1
225bp
FPKM:3.17 TPM:2.43
2879 A_BomoASG_c13676_g1_i1
1017bp
 uncharacterized_protein_LOC101736872_[Bombyx_mori]
FPKM:2.94 TPM:2.26
2880 A_BomoASG_c13677_g1_i1
644bp
FPKM:4.82 TPM:3.69
previous next from show/58621

- SilkBase 1999-2023 -