SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/58621
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2551 A_BomoASG_c13309_g1_i1
461bp
FPKM:2.11 TPM:1.62
2552 A_BomoASG_c1330_g1_i1
277bp
FPKM:3.33 TPM:2.55
2553 A_BomoASG_c13311_g1_i1
764bp
FPKM:1.45 TPM:1.11
2554 A_BomoASG_c13314_g1_i1
317bp
 ATP-binding_cassette_sub-family_G_member_4-like_isoform_X1_[Helicoverpa_armigera]
FPKM:2.52 TPM:1.94
2555 A_BomoASG_c13315_g1_i1
337bp
 sedoheptulokinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0009052 P pentose-phosphate shunt, non-oxidative branch
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0035963 P cellular response to interleukin-13
GO:0043030 P regulation of macrophage activation
GO:0050277 F sedoheptulokinase activity
GO:0050727 P regulation of inflammatory response
GO:0071222 P cellular response to lipopolysaccharide
GO:0071353 P cellular response to interleukin-4
FPKM:0.00 TPM:0.00
2556 A_BomoASG_c13315_g1_i2
729bp
 sedoheptulokinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0009052 P pentose-phosphate shunt, non-oxidative branch
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0035963 P cellular response to interleukin-13
GO:0043030 P regulation of macrophage activation
GO:0050277 F sedoheptulokinase activity
GO:0050727 P regulation of inflammatory response
GO:0071222 P cellular response to lipopolysaccharide
GO:0071353 P cellular response to interleukin-4
FPKM:2.56 TPM:1.97
2557 A_BomoASG_c13315_g1_i3
259bp
 sedoheptulokinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0009052 P pentose-phosphate shunt, non-oxidative branch
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0035963 P cellular response to interleukin-13
GO:0043030 P regulation of macrophage activation
GO:0050277 F sedoheptulokinase activity
GO:0050727 P regulation of inflammatory response
GO:0071222 P cellular response to lipopolysaccharide
GO:0071353 P cellular response to interleukin-4
FPKM:1.67 TPM:1.28
2558 A_BomoASG_c13316_g1_i1
452bp
FPKM:3.76 TPM:2.88
2559 A_BomoASG_c13317_g1_i1
2516bp
 uncharacterized_protein_LOC101742884_[Bombyx_mori]
GO:0000164 C protein phosphatase type 1 complex
GO:0001934 P positive regulation of protein phosphorylation
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006417 P regulation of translation
GO:0006915 P apoptotic process
GO:0007568 P aging
GO:0008157 F protein phosphatase 1 binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010628 P positive regulation of gene expression
GO:0010801 P negative regulation of peptidyl-threonine phosphorylation
GO:0010955 P negative regulation of protein processing
GO:0014070 P response to organic cyclic compound
GO:0016020 C membrane
GO:0019888 F protein phosphatase regulator activity
GO:0019901 F protein kinase binding
GO:0019903 F protein phosphatase binding
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0032515 P negative regulation of phosphoprotein phosphatase activity
GO:0032516 P positive regulation of phosphoprotein phosphatase activity
GO:0033138 P positive regulation of peptidyl-serine phosphorylation
GO:0034644 P cellular response to UV
GO:0034976 P response to endoplasmic reticulum stress
GO:0035308 P negative regulation of protein dephosphorylation
GO:0035690 P cellular response to xenobiotic stimulus
GO:0035902 P response to immobilization stress
GO:0036496 P regulation of translational initiation by eIF2 alpha dephosphorylation
GO:0042220 P response to cocaine
GO:0043065 P positive regulation of apoptotic process
GO:0045765 P regulation of angiogenesis
GO:0045943 P positive regulation of transcription by RNA polymerase I
GO:0060548 P negative regulation of cell death
GO:0060734 P regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation
GO:0070262 P peptidyl-serine dephosphorylation
GO:0070972 P protein localization to endoplasmic reticulum
GO:0071236 P cellular response to antibiotic
GO:0071322 P cellular response to carbohydrate stimulus
GO:0071407 P cellular response to organic cyclic compound
GO:0072703 P cellular response to methyl methanesulfonate
GO:0072732 P cellular response to calcium ion starvation
GO:0090648 P response to environmental enrichment
GO:0090650 P cellular response to oxygen-glucose deprivation
GO:1902310 P positive regulation of peptidyl-serine dephosphorylation
GO:1903573 P negative regulation of response to endoplasmic reticulum stress
GO:1903912 P negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation
GO:1903917 P positive regulation of endoplasmic reticulum stress-induced eIF2 alpha dephosphorylation
GO:1904308 P cellular response to desipramine
GO:1904310 P cellular response to cordycepin
GO:1904312 P cellular response to gold(3+)
GO:1904314 P cellular response to methamphetamine hydrochloride
GO:1990441 P negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress
FPKM:60.16 TPM:46.14
2560 A_BomoASG_c13318_g1_i1
325bp
 PREDICTED:_uncharacterized_protein_LOC106133701_isoform_X2_[Amyelois_transitella]
FPKM:1.03 TPM:0.79
2561 A_BomoASG_c13318_g2_i1
538bp
FPKM:2.76 TPM:2.12
2562 A_BomoASG_c1331_g1_i1
247bp
FPKM:4.34 TPM:3.33
2563 A_BomoASG_c13320_g1_i1
2070bp
 PREDICTED:_serine/threonine-protein_phosphatase_PP1-beta_catalytic_subunit_[Papilio_polytes]
GO:0004721 F phosphoprotein phosphatase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0005977 P glycogen metabolic process
GO:0006470 P protein dephosphorylation
GO:0007049 P cell cycle
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0030155 P regulation of cell adhesion
GO:0046872 F metal ion binding
GO:0050115 F myosin-light-chain-phosphatase activity
GO:0051301 P cell division
GO:0072357 C PTW/PP1 phosphatase complex
FPKM:100.54 TPM:77.12
2564 A_BomoASG_c13321_g1_i1
208bp
FPKM:6.00 TPM:4.60
2565 A_BomoASG_c13322_g1_i1
3014bp
 silk_gland_factor_3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0030154 P cell differentiation
GO:0043565 F sequence-specific DNA binding
FPKM:41.61 TPM:31.92
2566 A_BomoASG_c13323_g1_i1
1360bp
 protein_transport_protein_Sec31A_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0031410 C cytoplasmic vesicle
FPKM:4.49 TPM:3.45
2567 A_BomoASG_c13323_g1_i2
1167bp
 protein_transport_protein_Sec31A_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0031410 C cytoplasmic vesicle
FPKM:21.98 TPM:16.86
2568 A_BomoASG_c13326_g1_i1
228bp
FPKM:2.29 TPM:1.76
2569 A_BomoASG_c13327_g1_i1
1406bp
 protein_transport_protein_Sec31A_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0031410 C cytoplasmic vesicle
FPKM:21.88 TPM:16.78
2570 A_BomoASG_c13329_g1_i1
506bp
FPKM:5.86 TPM:4.50
2571 A_BomoASG_c13330_g1_i1
248bp
 putative_endonuclease/reverse_transcriptase_[Danaus_plexippus_plexippus]
FPKM:2.46 TPM:1.88
2572 A_BomoASG_c13332_g1_i1
305bp
FPKM:4.28 TPM:3.28
2573 A_BomoASG_c13334_g1_i1
448bp
 ATP-dependent_DNA_helicase_DDX11_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0000922 C spindle pole
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003723 F RNA binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006139 P nucleobase-containing compound metabolic process
GO:0007049 P cell cycle
GO:0007062 P sister chromatid cohesion
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0016032 P viral process
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030496 C midbody
GO:0032508 P DNA duplex unwinding
GO:0036498 P IRE1-mediated unfolded protein response
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0070062 C extracellular exosome
FPKM:2.21 TPM:1.69
2574 A_BomoASG_c13335_g1_i1
1900bp
 galectin-5_[Bombyx_mori]
GO:0001819 P positive regulation of cytokine production
GO:0002376 P immune system process
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006935 P chemotaxis
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007565 P female pregnancy
GO:0010628 P positive regulation of gene expression
GO:0010629 P negative regulation of gene expression
GO:0010819 P regulation of T cell chemotaxis
GO:0010862 P positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0016936 F galactoside binding
GO:0019899 F enzyme binding
GO:0030246 F carbohydrate binding
GO:0032496 P response to lipopolysaccharide
GO:0032689 P negative regulation of interferon-gamma production
GO:0032722 P positive regulation of chemokine production
GO:0032732 P positive regulation of interleukin-1 production
GO:0032760 P positive regulation of tumor necrosis factor production
GO:0032815 P negative regulation of natural killer cell activation
GO:0032823 P regulation of natural killer cell differentiation
GO:0033081 P regulation of T cell differentiation in thymus
GO:0043032 P positive regulation of macrophage activation
GO:0043322 P negative regulation of natural killer cell degranulation
GO:0043539 F protein serine/threonine kinase activator activity
GO:0045089 P positive regulation of innate immune response
GO:0045185 P maintenance of protein location
GO:0045591 P positive regulation of regulatory T cell differentiation
GO:0050728 P negative regulation of inflammatory response
GO:0051353 P positive regulation of oxidoreductase activity
GO:0071902 P positive regulation of protein serine/threonine kinase activity
GO:0098586 P cellular response to virus
GO:1900426 P positive regulation of defense response to bacterium
GO:1902714 P negative regulation of interferon-gamma production
GO:2000316 P regulation of T-helper 17 type immune response
GO:2000406 P positive regulation of T cell migration
GO:2000562 P negative regulation of CD4-positive, alpha-beta T cell proliferation
GO:2000679 P positive regulation of transcription regulatory region DNA binding
GO:2000778 P positive regulation of interleukin-6 production
GO:2001181 P positive regulation of interleukin-10 production
FPKM:142.64 TPM:109.41
2575 A_BomoASG_c13335_g1_i2
1860bp
 galectin-5_[Bombyx_mori]
GO:0001819 P positive regulation of cytokine production
GO:0002376 P immune system process
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006935 P chemotaxis
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007565 P female pregnancy
GO:0010628 P positive regulation of gene expression
GO:0010629 P negative regulation of gene expression
GO:0010819 P regulation of T cell chemotaxis
GO:0010862 P positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0016936 F galactoside binding
GO:0019899 F enzyme binding
GO:0030246 F carbohydrate binding
GO:0032496 P response to lipopolysaccharide
GO:0032689 P negative regulation of interferon-gamma production
GO:0032722 P positive regulation of chemokine production
GO:0032732 P positive regulation of interleukin-1 production
GO:0032760 P positive regulation of tumor necrosis factor production
GO:0032815 P negative regulation of natural killer cell activation
GO:0032823 P regulation of natural killer cell differentiation
GO:0033081 P regulation of T cell differentiation in thymus
GO:0043032 P positive regulation of macrophage activation
GO:0043322 P negative regulation of natural killer cell degranulation
GO:0043539 F protein serine/threonine kinase activator activity
GO:0045089 P positive regulation of innate immune response
GO:0045185 P maintenance of protein location
GO:0045591 P positive regulation of regulatory T cell differentiation
GO:0050728 P negative regulation of inflammatory response
GO:0051353 P positive regulation of oxidoreductase activity
GO:0071902 P positive regulation of protein serine/threonine kinase activity
GO:0098586 P cellular response to virus
GO:1900426 P positive regulation of defense response to bacterium
GO:1902714 P negative regulation of interferon-gamma production
GO:2000316 P regulation of T-helper 17 type immune response
GO:2000406 P positive regulation of T cell migration
GO:2000562 P negative regulation of CD4-positive, alpha-beta T cell proliferation
GO:2000679 P positive regulation of transcription regulatory region DNA binding
GO:2000778 P positive regulation of interleukin-6 production
GO:2001181 P positive regulation of interleukin-10 production
FPKM:0.01 TPM:0.01
2576 A_BomoASG_c13337_g1_i1
1404bp
 ubiquitin_carboxyl-terminal_hydrolase_32_isoform_X2_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0046872 F metal ion binding
FPKM:3.35 TPM:2.57
2577 A_BomoASG_c13338_g1_i1
250bp
FPKM:4.22 TPM:3.23
2578 A_BomoASG_c13339_g1_i1
414bp
FPKM:9.07 TPM:6.95
2579 A_BomoASG_c13340_g1_i1
577bp
FPKM:2.65 TPM:2.03
2580 A_BomoASG_c13340_g2_i1
265bp
FPKM:2.10 TPM:1.61
previous next from show/58621

- SilkBase 1999-2023 -