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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2461 A_BomoASG_c13221_g1_i1
2546bp
 U3_small_nucleolar_RNA-associated_protein_14_homolog_C_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030490 P maturation of SSU-rRNA
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
FPKM:31.48 TPM:24.15
2462 A_BomoASG_c13222_g1_i1
416bp
FPKM:0.83 TPM:0.64
2463 A_BomoASG_c13222_g1_i2
463bp
FPKM:0.63 TPM:0.48
2464 A_BomoASG_c13223_g1_i1
281bp
 transcription_factor_Sp3_isoform_X4_[Bombyx_mori]
FPKM:7.83 TPM:6.01
2465 A_BomoASG_c13224_g1_i1
204bp
 PREDICTED:_serrate_RNA_effector_molecule_homolog_isoform_X4_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0031047 P gene silencing by RNA
GO:0031053 P primary miRNA processing
FPKM:13.83 TPM:10.61
2466 A_BomoASG_c13224_g1_i2
207bp
 serrate_RNA_effector_molecule_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0031047 P gene silencing by RNA
GO:0031053 P primary miRNA processing
FPKM:0.00 TPM:0.00
2467 A_BomoASG_c13225_g1_i1
533bp
 hypothetical_protein_RR48_05194_[Papilio_machaon]
FPKM:4.98 TPM:3.82
2468 A_BomoASG_c13226_g1_i1
331bp
FPKM:4.98 TPM:3.82
2469 A_BomoASG_c13227_g1_i1
2547bp
 D-3-phosphoglycerate_dehydrogenase_[Bombyx_mori]
GO:0004617 F phosphoglycerate dehydrogenase activity
GO:0006564 P L-serine biosynthetic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:40.17 TPM:30.81
2470 A_BomoASG_c13229_g1_i1
215bp
FPKM:0.00 TPM:0.00
2471 A_BomoASG_c1322_g1_i1
304bp
FPKM:0.78 TPM:0.60
2472 A_BomoASG_c13231_g1_i1
214bp
FPKM:2.75 TPM:2.11
2473 A_BomoASG_c13234_g1_i1
1005bp
FPKM:51.34 TPM:39.38
2474 A_BomoASG_c13235_g1_i1
274bp
FPKM:3.41 TPM:2.61
2475 A_BomoASG_c13237_g1_i1
864bp
 proteasome_assembly_chaperone_2_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0043248 P proteasome assembly
FPKM:24.44 TPM:18.75
2476 A_BomoASG_c13238_g1_i1
4874bp
 uncharacterized_protein_LOC101738072_isoform_X1_[Bombyx_mori]
FPKM:60.70 TPM:46.56
2477 A_BomoASG_c13240_g1_i1
590bp
 uncharacterized_protein_LOC101742417_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2478 A_BomoASG_c13240_g1_i2
380bp
 uncharacterized_protein_LOC101742417_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2479 A_BomoASG_c13240_g1_i3
762bp
 uncharacterized_protein_LOC101742417_[Bombyx_mori]
FPKM:4.17 TPM:3.20
2480 A_BomoASG_c13241_g1_i1
1692bp
 tubulin_gamma-1_chain_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000930 C gamma-tubulin complex
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005827 C polar microtubule
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0007020 P microtubule nucleation
GO:0008152 P metabolic process
GO:0031122 P cytoplasmic microtubule organization
FPKM:18.12 TPM:13.90
2481 A_BomoASG_c13242_g1_i1
1272bp
 ubiquitin_fusion_degradation_protein_1_homolog_[Bombyx_mori]
GO:0000502 C proteasome complex
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0098586 P cellular response to virus
FPKM:25.24 TPM:19.36
2482 A_BomoASG_c13243_g1_i1
466bp
 protein_borderless_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005887 C integral component of plasma membrane
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007422 P peripheral nervous system development
GO:0007629 P flight behavior
GO:0007638 P mechanosensory behavior
GO:0008039 P synaptic target recognition
GO:0008344 P adult locomotory behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016199 P axon midline choice point recognition
GO:0019233 P sensory perception of pain
GO:0030537 P larval behavior
GO:0045467 P R7 cell development
GO:0046331 P lateral inhibition
GO:0048814 P regulation of dendrite morphogenesis
GO:0070593 P dendrite self-avoidance
GO:0098609 P cell-cell adhesion
GO:0098632 F cell-cell adhesion mediator activity
FPKM:1.25 TPM:0.96
2483 A_BomoASG_c13243_g1_i2
282bp
 protein_borderless_[Bombyx_mori]
FPKM:2.92 TPM:2.24
2484 A_BomoASG_c13243_g1_i3
218bp
 protein_borderless_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2485 A_BomoASG_c13245_g1_i1
1989bp
 polyadenylate_binding_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0008143 F poly(A) binding
GO:0022008 P neurogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:66.01 TPM:50.63
2486 A_BomoASG_c13245_g1_i2
1858bp
 polyadenylate_binding_protein_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0008143 F poly(A) binding
GO:0022008 P neurogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:13.07 TPM:10.02
2487 A_BomoASG_c13246_g1_i1
1788bp
 squid_protein_homologue_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0000785 C chromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0007293 P germarium-derived egg chamber formation
GO:0007297 P ovarian follicle cell migration
GO:0007314 P oocyte anterior/posterior axis specification
GO:0008069 P dorsal/ventral axis specification, ovarian follicular epithelium
GO:0008298 P intracellular mRNA localization
GO:0009953 P dorsal/ventral pattern formation
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0017148 P negative regulation of translation
GO:0019094 P pole plasm mRNA localization
GO:0030529 C ribonucleoprotein complex
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0033119 P negative regulation of RNA splicing
GO:0035062 C omega speckle
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:167.71 TPM:128.64
2488 A_BomoASG_c13246_g1_i2
3033bp
 squid_protein_homologue_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0000785 C chromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0007293 P germarium-derived egg chamber formation
GO:0007297 P ovarian follicle cell migration
GO:0007314 P oocyte anterior/posterior axis specification
GO:0008069 P dorsal/ventral axis specification, ovarian follicular epithelium
GO:0008298 P intracellular mRNA localization
GO:0009953 P dorsal/ventral pattern formation
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0017148 P negative regulation of translation
GO:0019094 P pole plasm mRNA localization
GO:0030529 C ribonucleoprotein complex
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0033119 P negative regulation of RNA splicing
GO:0035062 C omega speckle
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:76.26 TPM:58.49
2489 A_BomoASG_c13246_g1_i3
1725bp
 squid_protein_homologue_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0000785 C chromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0007293 P germarium-derived egg chamber formation
GO:0007297 P ovarian follicle cell migration
GO:0007314 P oocyte anterior/posterior axis specification
GO:0008069 P dorsal/ventral axis specification, ovarian follicular epithelium
GO:0008298 P intracellular mRNA localization
GO:0009953 P dorsal/ventral pattern formation
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0017148 P negative regulation of translation
GO:0019094 P pole plasm mRNA localization
GO:0030529 C ribonucleoprotein complex
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0033119 P negative regulation of RNA splicing
GO:0035062 C omega speckle
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:143.83 TPM:110.32
2490 A_BomoASG_c13247_g1_i1
229bp
FPKM:31.73 TPM:24.34
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