SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/58621
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2071 A_BomoASG_c12810_g1_i1
938bp
FPKM:5.57 TPM:4.27
2072 A_BomoASG_c12811_g1_i1
546bp
 beta-tubulin,_partial_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
FPKM:1.81 TPM:1.38
2073 A_BomoASG_c12812_g1_i1
224bp
FPKM:3.21 TPM:2.46
2074 A_BomoASG_c12813_g1_i1
272bp
 PREDICTED:_uncharacterized_protein_LOC105204256_[Solenopsis_invicta]
FPKM:3.96 TPM:3.04
2075 A_BomoASG_c12814_g1_i1
2686bp
 mannosyl-oligosaccharide_glucosidase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004558 F alpha-1,4-glucosidase activity
GO:0004573 F Glc3Man9GlcNAc2 oligosaccharide glucosidase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006487 P protein N-linked glycosylation
GO:0008152 P metabolic process
GO:0009311 P oligosaccharide metabolic process
GO:0009913 P epidermal cell differentiation
GO:0010053 P root epidermal cell differentiation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
FPKM:29.03 TPM:22.26
2076 A_BomoASG_c12815_g1_i1
420bp
 adenylate_cyclase_type_6_[Bombyx_mori]
FPKM:3.54 TPM:2.72
2077 A_BomoASG_c12816_g1_i1
337bp
 uncharacterized_protein_LOC101746464_isoform_X3_[Bombyx_mori]
FPKM:5.14 TPM:3.95
2078 A_BomoASG_c12819_g1_i1
1034bp
 replication_protein_A2_[Bombyx_mori]
GO:0000723 P telomere maintenance
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006298 P mismatch repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0016605 C PML body
GO:0019899 F enzyme binding
GO:0019903 F protein phosphatase binding
GO:0031571 P mitotic G1 DNA damage checkpoint signaling
GO:0031625 F ubiquitin protein ligase binding
GO:0035861 C site of double-strand break
GO:0047485 F protein N-terminus binding
GO:2000001 P regulation of DNA damage checkpoint
FPKM:36.63 TPM:28.09
2079 A_BomoASG_c12820_g1_i1
898bp
 small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
FPKM:3.49 TPM:2.68
2080 A_BomoASG_c12821_g1_i1
291bp
FPKM:0.43 TPM:0.33
2081 A_BomoASG_c12821_g2_i1
273bp
FPKM:0.98 TPM:0.75
2082 A_BomoASG_c12822_g1_i1
1595bp
 succinate--CoA_ligase_[GDP-forming]_subunit_beta,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004776 F succinate-CoA ligase (GDP-forming) activity
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005815 C microtubule organizing center
GO:0005886 C plasma membrane
GO:0006099 P tricarboxylic acid cycle
GO:0006104 P succinyl-CoA metabolic process
GO:0008152 P metabolic process
GO:0016874 F ligase activity
FPKM:30.69 TPM:23.54
2083 A_BomoASG_c12823_g1_i1
271bp
FPKM:1.00 TPM:0.77
2084 A_BomoASG_c12824_g1_i1
1133bp
hypothetical_protein_CathTA2_0037_[Caldalkalibacillus_thermarum_TA2.A1]
FPKM:45.71 TPM:35.06
2085 A_BomoASG_c12826_g1_i1
544bp
FPKM:4.39 TPM:3.36
2086 A_BomoASG_c12827_g1_i1
324bp
FPKM:2.77 TPM:2.12
2087 A_BomoASG_c12828_g1_i1
710bp
FPKM:17.51 TPM:13.43
2088 A_BomoASG_c12829_g1_i1
203bp
FPKM:1.08 TPM:0.83
2089 A_BomoASG_c12830_g1_i1
410bp
FPKM:2.07 TPM:1.59
2090 A_BomoASG_c12831_g1_i1
237bp
FPKM:13.10 TPM:10.04
2091 A_BomoASG_c12831_g2_i1
202bp
FPKM:0.00 TPM:0.00
2092 A_BomoASG_c12833_g1_i1
376bp
 ankyrin-3_isoform_X1_[Bombyx_mori]
GO:0006541 P glutamine metabolic process
GO:0016787 F hydrolase activity
FPKM:3.98 TPM:3.05
2093 A_BomoASG_c12834_g1_i1
1646bp
 peroxisomal_membrane_anchor_protein_[Bombyx_mori]
GO:0003714 F transcription corepressor activity
GO:0005102 F signaling receptor binding
GO:0005622 C intracellular anatomical structure
GO:0005730 C nucleolus
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0006461 P protein-containing complex assembly
GO:0006810 P transport
GO:0007031 P peroxisome organization
GO:0008017 F microtubule binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016558 P protein import into peroxisome matrix
GO:0016560 P protein import into peroxisome matrix, docking
GO:0016561 P protein import into peroxisome matrix, translocation
GO:0032091 P negative regulation of protein binding
GO:0034453 P microtubule anchoring
GO:0036250 P peroxisome transport along microtubule
GO:0042802 F identical protein binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0044721 P protein import into peroxisome matrix, substrate release
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0048487 F beta-tubulin binding
GO:0051260 P protein homooligomerization
GO:1901094 P negative regulation of protein homotetramerization
FPKM:18.49 TPM:14.18
2094 A_BomoASG_c12834_g1_i2
996bp
 peroxisomal_membrane_anchor_protein_[Bombyx_mori]
FPKM:0.41 TPM:0.31
2095 A_BomoASG_c12835_g1_i1
298bp
 putative_pol_protein_[Danaus_plexippus_plexippus]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:3.26 TPM:2.50
2096 A_BomoASG_c12836_g1_i1
223bp
FPKM:0.81 TPM:0.62
2097 A_BomoASG_c12837_g1_i1
1119bp
 39S_ribosomal_protein_L47,_mitochondrial_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003735 F structural constituent of ribosome
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0008150 P biological_process
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
FPKM:17.31 TPM:13.28
2098 A_BomoASG_c12838_g1_i1
426bp
FPKM:1.73 TPM:1.33
2099 A_BomoASG_c12839_g1_i1
457bp
FPKM:2.23 TPM:1.71
2100 A_BomoASG_c1283_g1_i1
292bp
FPKM:3.40 TPM:2.61
previous next from show/58621

- SilkBase 1999-2023 -